Detailed information NTG0906957

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: SDC64_RS07310
• Genome accession: NZ_CP139048
• Coordinates: 1558739..1559458 (+)
• Length: 239 a.a.
• NCBI ID: WP_005080462.1
• Uniprot ID: C0VKX1
• Organism: Acinetobacter haemolyticus strain JS-1us
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1553739..1564458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDC64_RS07275 (SDC64_07275)	-	1553972..1554955 (+)	984	WP_243897129.1	DNA polymerase III subunit delta'	-
SDC64_RS07280 (SDC64_07280)	-	1555099..1555407 (+)	309	WP_004639308.1	hypothetical protein	-
SDC64_RS07285 (SDC64_07285)	-	1555730..1556074 (+)	345	WP_004639306.1	PilZ domain-containing protein	-
SDC64_RS07290 (SDC64_07290)	-	1556095..1556868 (+)	774	WP_151211963.1	TatD family hydrolase	-
SDC64_RS07295 (SDC64_07295)	-	1556910..1557515 (+)	606	WP_017394545.1	TetR/AcrR family transcriptional regulator	-
SDC64_RS07300 (SDC64_07300)	-	1557530..1558141 (+)	612	WP_320533379.1	type II secretion system protein	-
SDC64_RS07305 (SDC64_07305)	xcpV	1558326..1558733 (+)	408	WP_320533483.1	type II secretion system minor pseudopilin GspI	Machinery gene
SDC64_RS07310 (SDC64_07310)	xcpW	1558739..1559458 (+)	720	WP_005080462.1	type II secretion system minor pseudopilin GspJ	Machinery gene
SDC64_RS07315 (SDC64_07315)	gspK	1559460..1560437 (+)	978	WP_320533380.1	type II secretion system minor pseudopilin GspK	-
SDC64_RS07320 (SDC64_07320)	-	1560523..1561119 (+)	597	WP_017394547.1	6-carboxytetrahydropterin synthase	-
SDC64_RS07325 (SDC64_07325)	ung	1561166..1561879 (+)	714	WP_075316509.1	uracil-DNA glycosylase	-
SDC64_RS07330 (SDC64_07330)	-	1561876..1563000 (+)	1125	WP_171055793.1	enoyl-CoA hydratase/isomerase family protein	-
SDC64_RS07335 (SDC64_07335)	tadA	1563005..1563517 (+)	513	WP_005080470.1	tRNA adenosine(34) deaminase TadA	-
SDC64_RS07340 (SDC64_07340)	-	1563585..1564025 (+)	441	WP_004639295.1	SRPBCC family protein	-

Sequence

Protein

• Length: 239 a.a.
• Molecular weight: 27659.68 Da
• Isoelectric Point: 9.4555

>NTDB_id=906957 SDC64_RS07310 WP_005080462.1 1558739..1559458(+) (xcpW) [Acinetobacter haemolyticus strain JS-1us]
MNNKNNNMQISKFHFVNPRTQSLAFRLAERSSSARLNRSSGFTLVELLVAIAIFAVLSMLGWKVFDYLLKVKDRNAEHEV
SLFALQDAYQQILRDSLQIIPLTANDGRQLQAALVLNDQVFMFSKAGVSDPLKQGLSPYERIEYRFDESQKRLYRLKYTN
LNIPNRVQPMSSVLLDNVERFKVSVFNPQELMQWPENNVDPENTAELRKLPLGLKIQLTVAGTDYEWIYRLIDRSQDSQ

Nucleotide

• Length: 720 bp

>NTDB_id=906957 SDC64_RS07310 WP_005080462.1 1558739..1559458(+) (xcpW) [Acinetobacter haemolyticus strain JS-1us]
ATGAATAATAAAAACAATAATATGCAAATCTCAAAGTTTCACTTTGTTAATCCTCGCACTCAAAGCCTAGCTTTTCGTCT
TGCGGAGCGGTCGAGCAGTGCTCGACTTAATCGCTCCTCAGGATTTACGTTGGTTGAGTTGCTGGTTGCAATTGCAATTT
TTGCAGTTCTTTCTATGTTAGGTTGGAAAGTATTTGATTATTTGTTAAAAGTGAAAGATCGAAATGCTGAACATGAAGTG
AGTTTGTTTGCATTACAAGACGCTTATCAGCAGATCTTGCGAGATAGTTTGCAGATCATCCCTTTAACAGCAAATGATGG
AAGGCAATTGCAAGCTGCATTGGTACTTAATGATCAGGTTTTTATGTTCAGTAAAGCTGGTGTTTCTGATCCGCTCAAGC
AAGGGCTGTCGCCATACGAGCGCATCGAATATCGTTTTGATGAGTCTCAAAAAAGACTATATCGATTAAAATACACAAAT
CTAAATATTCCAAATCGTGTGCAGCCGATGTCAAGTGTATTGTTGGATAATGTTGAGCGCTTTAAAGTATCTGTTTTCAA
TCCACAAGAGTTAATGCAGTGGCCTGAAAATAATGTAGATCCAGAAAACACGGCTGAATTAAGAAAGTTACCATTAGGAT
TGAAAATTCAATTGACTGTTGCTGGTACAGATTATGAGTGGATCTATCGTCTGATCGATCGTAGTCAGGATAGTCAATGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (37-60)

• Type II secretion system (T2SS), protein J (T2SSJ) (94-223)

3D structure

• AlphaFold DB: C0VKX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	71.564	88.285	0.632