Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SDC64_RS02030 Genome accession   NZ_CP139048
Coordinates   415862..416521 (-) Length   219 a.a.
NCBI ID   WP_320532939.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410862..421521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS02005 (SDC64_02005) - 411293..411580 (+) 288 WP_320532937.1 STAS domain-containing protein -
  SDC64_RS02010 (SDC64_02010) - 411711..413627 (+) 1917 WP_005086869.1 acyltransferase family protein -
  SDC64_RS02015 (SDC64_02015) - 413701..414717 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  SDC64_RS02020 (SDC64_02020) - 414891..415475 (+) 585 WP_320532938.1 TIGR00730 family Rossman fold protein -
  SDC64_RS02025 (SDC64_02025) - 415486..415893 (+) 408 WP_026056363.1 NUDIX domain-containing protein -
  SDC64_RS02030 (SDC64_02030) comF 415862..416521 (-) 660 WP_320532939.1 phosphoribosyltransferase family protein Machinery gene
  SDC64_RS02035 (SDC64_02035) recG 416514..418559 (-) 2046 WP_320532940.1 ATP-dependent DNA helicase RecG -
  SDC64_RS02040 (SDC64_02040) - 418578..419405 (+) 828 WP_005086857.1 NAD-dependent epimerase/dehydratase family protein -
  SDC64_RS02045 (SDC64_02045) - 419549..420529 (+) 981 WP_005086855.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25032.14 Da        Isoelectric Point: 9.8351

>NTDB_id=906945 SDC64_RS02030 WP_320532939.1 415862..416521(-) (comF) [Acinetobacter haemolyticus strain JS-1us]
MFKLLGSQTQRFLDHFTACDLCGIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRQERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKSLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=906945 SDC64_RS02030 WP_320532939.1 415862..416521(-) (comF) [Acinetobacter haemolyticus strain JS-1us]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGGAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGCTGAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGCCTGCCATTATCAATATCCCATCAACCGCATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
CTTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGCCAAGAACGTTTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACGACTGGCAGCTCGATTGATGC
ATTATCCAAAAGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

65.072

95.434

0.621
  comF Acinetobacter baumannii D1279779

64.593

95.434

0.616