Detailed information NTG0906822

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SHB59_RS26135
• Genome accession: NZ_CP139026
• Coordinates: 5812689..5814017 (+)
• Length: 442 a.a.
• NCBI ID: WP_320448740.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S1Bt23
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5807689..5819017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHB59_RS26115 (SHB59_26115)	pgeF	5809178..5809903 (-)	726	WP_123362889.1	peptidoglycan editing factor PgeF	-
SHB59_RS26120 (SHB59_26120)	rluD	5809900..5810862 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
SHB59_RS26125 (SHB59_26125)	-	5811014..5812036 (+)	1023	WP_320448739.1	outer membrane protein assembly factor BamD	-
SHB59_RS26130 (SHB59_26130)	-	5812171..5812398 (+)	228	WP_009045695.1	PP0621 family protein	-
SHB59_RS26135 (SHB59_26135)	pilR	5812689..5814017 (+)	1329	WP_320448740.1	sigma-54 dependent transcriptional regulator	Regulator
SHB59_RS26140 (SHB59_26140)	thiO	5814014..5815114 (-)	1101	WP_320448741.1	glycine oxidase ThiO	-
SHB59_RS26145 (SHB59_26145)	-	5815169..5815570 (-)	402	WP_007924724.1	type IV pilin protein	-
SHB59_RS26150 (SHB59_26150)	-	5815584..5818655 (-)	3072	WP_320448742.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48901.43 Da
• Isoelectric Point: 9.2088

>NTDB_id=906822 SHB59_RS26135 WP_320448740.1 5812689..5814017(+) (pilR) [Pseudomonas sp. S1Bt23]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLYLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIDKLARSQASVYIS
GESGSGKELVARAIHEQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNSAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=906822 SHB59_RS26135 WP_320448740.1 5812689..5814017(+) (pilR) [Pseudomonas sp. S1Bt23]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGTCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGTATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCATTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGTGCCCTGCCCGGATCGATACCACCGAACCCTGCTACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAAATCGACAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACTGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACAGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.111	100	0.683
pilR	Acinetobacter baumannii strain A118	43.601	100	0.455