Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SHB59_RS12490 Genome accession   NZ_CP139026
Coordinates   2822150..2824381 (-) Length   743 a.a.
NCBI ID   WP_320450069.1    Uniprot ID   -
Organism   Pseudomonas sp. S1Bt23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2817150..2829381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHB59_RS12455 (SHB59_12455) murB 2817528..2818547 (-) 1020 WP_320450067.1 UDP-N-acetylmuramate dehydrogenase -
  SHB59_RS12460 (SHB59_12460) - 2818544..2819008 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  SHB59_RS12465 (SHB59_12465) kdsB 2819008..2819772 (-) 765 WP_123573894.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SHB59_RS12470 (SHB59_12470) - 2819769..2819954 (-) 186 WP_007931663.1 Trm112 family protein -
  SHB59_RS12475 (SHB59_12475) lpxK 2819977..2820987 (-) 1011 WP_320450068.1 tetraacyldisaccharide 4'-kinase -
  SHB59_RS12480 (SHB59_12480) - 2820987..2821415 (-) 429 WP_007931660.1 ExbD/TolR family protein -
  SHB59_RS12485 (SHB59_12485) exbB 2821412..2822047 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SHB59_RS12490 (SHB59_12490) comA 2822150..2824381 (-) 2232 WP_320450069.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SHB59_RS12495 (SHB59_12495) - 2824530..2825045 (+) 516 WP_007931653.1 DUF2062 domain-containing protein -
  SHB59_RS12500 (SHB59_12500) - 2825094..2825873 (-) 780 WP_007931651.1 ABC transporter permease -
  SHB59_RS12505 (SHB59_12505) - 2825870..2826802 (-) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  SHB59_RS12510 (SHB59_12510) - 2826935..2827558 (-) 624 WP_320450070.1 glutathione S-transferase -
  SHB59_RS12515 (SHB59_12515) - 2827601..2828260 (-) 660 WP_274336067.1 transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81094.11 Da        Isoelectric Point: 9.9596

>NTDB_id=906812 SHB59_RS12490 WP_320450069.1 2822150..2824381(-) (comA) [Pseudomonas sp. S1Bt23]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=906812 SHB59_RS12490 WP_320450069.1 2822150..2824381(-) (comA) [Pseudomonas sp. S1Bt23]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGTCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGACGGAT
TCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGCCTGCAGCCAGGCTTCTGGCTGTCTTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGTCGCCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCTCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGTTGTTGGTGGTG
TTCCCACCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGATCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGTGCC
GACGCCATCCAGCGCGGCCTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAACGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.673

96.77

0.626