Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SHB59_RS12485 Genome accession   NZ_CP139026
Coordinates   2821412..2822047 (-) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas sp. S1Bt23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2816412..2827047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHB59_RS12450 (SHB59_12450) - 2816809..2817279 (-) 471 WP_085530224.1 (2Fe-2S)-binding protein -
  SHB59_RS12455 (SHB59_12455) murB 2817528..2818547 (-) 1020 WP_320450067.1 UDP-N-acetylmuramate dehydrogenase -
  SHB59_RS12460 (SHB59_12460) - 2818544..2819008 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  SHB59_RS12465 (SHB59_12465) kdsB 2819008..2819772 (-) 765 WP_123573894.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SHB59_RS12470 (SHB59_12470) - 2819769..2819954 (-) 186 WP_007931663.1 Trm112 family protein -
  SHB59_RS12475 (SHB59_12475) lpxK 2819977..2820987 (-) 1011 WP_320450068.1 tetraacyldisaccharide 4'-kinase -
  SHB59_RS12480 (SHB59_12480) - 2820987..2821415 (-) 429 WP_007931660.1 ExbD/TolR family protein -
  SHB59_RS12485 (SHB59_12485) exbB 2821412..2822047 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SHB59_RS12490 (SHB59_12490) comA 2822150..2824381 (-) 2232 WP_320450069.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SHB59_RS12495 (SHB59_12495) - 2824530..2825045 (+) 516 WP_007931653.1 DUF2062 domain-containing protein -
  SHB59_RS12500 (SHB59_12500) - 2825094..2825873 (-) 780 WP_007931651.1 ABC transporter permease -
  SHB59_RS12505 (SHB59_12505) - 2825870..2826802 (-) 933 WP_007931649.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=906811 SHB59_RS12485 WP_007931657.1 2821412..2822047(-) (exbB) [Pseudomonas sp. S1Bt23]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=906811 SHB59_RS12485 WP_007931657.1 2821412..2822047(-) (exbB) [Pseudomonas sp. S1Bt23]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATTGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGTACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867