Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW57_RS08000 Genome accession   NZ_CP139025
Coordinates   1538466..1539035 (+) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70484     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533466..1544035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW57_RS07975 cysE 1534679..1535326 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SGW57_RS07980 cysS 1535310..1536710 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  SGW57_RS07985 - 1536703..1537107 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  SGW57_RS07990 rlmB 1537115..1537861 (+) 747 WP_209272541.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW57_RS07995 - 1537861..1538385 (+) 525 WP_000664740.1 NYN domain-containing protein -
  SGW57_RS08000 sigH 1538466..1539035 (+) 570 WP_000872867.1 RNA polymerase sigma factor Regulator
  SGW57_RS08005 rpmG 1539150..1539293 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  SGW57_RS08010 secE 1539349..1539531 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW57_RS08015 nusG 1539544..1540092 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW57_RS08020 rplK 1540273..1540695 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW57_RS08025 rplA 1540903..1541592 (+) 690 WP_001074620.1 50S ribosomal protein L1 -
  SGW57_RS08030 rplJ 1541867..1542367 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW57_RS08035 rplL 1542410..1542778 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  SGW57_RS08040 - 1542953..1543561 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=906780 SGW57_RS08000 WP_000872867.1 1538466..1539035(+) (sigH) [Staphylococcus aureus strain DA70484]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=906780 SGW57_RS08000 WP_000872867.1 1538466..1539035(+) (sigH) [Staphylococcus aureus strain DA70484]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979