Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IDSSA_RS03070 Genome accession   NZ_AP025249
Coordinates   624217..624786 (+) Length   189 a.a.
NCBI ID   WP_017431454.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IDSA1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 619217..629786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDSSA_RS03045 (IDSSA_0105930) cysE 620430..621077 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  IDSSA_RS03050 (IDSSA_0105940) cysS 621061..622461 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  IDSSA_RS03055 (IDSSA_0105950) - 622454..622858 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IDSSA_RS03060 (IDSSA_0105960) rlmB 622866..623612 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IDSSA_RS03065 (IDSSA_0105970) - 623612..624136 (+) 525 WP_000664738.1 NYN domain-containing protein -
  IDSSA_RS03070 (IDSSA_0105980) sigH 624217..624786 (+) 570 WP_017431454.1 sigma-70 family RNA polymerase sigma factor Regulator
  IDSSA_RS03075 rpmG 624901..625044 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  IDSSA_RS03080 (IDSSA_0105990) secE 625100..625282 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  IDSSA_RS03085 (IDSSA_0106000) nusG 625295..625843 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IDSSA_RS03090 (IDSSA_0106010) rplK 626024..626446 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  IDSSA_RS03095 (IDSSA_0106020) rplA 626654..627346 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  IDSSA_RS03100 (IDSSA_0106030) rplJ 627618..628118 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  IDSSA_RS03105 (IDSSA_0106040) rplL 628161..628529 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IDSSA_RS03110 (IDSSA_0106050) - 628704..629312 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23000.90 Da        Isoelectric Point: 9.4122

>NTDB_id=90678 IDSSA_RS03070 WP_017431454.1 624217..624786(+) (sigH) [Staphylococcus aureus strain IDSA1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYKVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=90678 IDSSA_RS03070 WP_017431454.1 624217..624786(+) (sigH) [Staphylococcus aureus strain IDSA1]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAAAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment