Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW57_RS02280 Genome accession   NZ_CP139025
Coordinates   360533..360928 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain DA70484     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355533..365928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW57_RS02255 thiE 355994..356635 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  SGW57_RS02260 thiM 356637..357428 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  SGW57_RS02265 thiD 357412..358242 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW57_RS02270 tenA 358235..358924 (-) 690 WP_000396068.1 thiaminase II -
  SGW57_RS02275 sceD 359449..360144 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  SGW57_RS02280 ssb 360533..360928 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  SGW57_RS02285 - 361122..361562 (+) 441 WP_000846746.1 YwpF-like family protein -
  SGW57_RS02290 fabZ 361619..362059 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW57_RS02295 murA 362093..363358 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW57_RS02300 - 363469..363702 (-) 234 WP_000384523.1 DUF1146 family protein -
  SGW57_RS02305 - 364581..364985 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=906770 SGW57_RS02280 WP_000932696.1 360533..360928(-) (ssb) [Staphylococcus aureus strain DA70484]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=906770 SGW57_RS02280 WP_000932696.1 360533..360928(-) (ssb) [Staphylococcus aureus strain DA70484]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985