Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SJY35_RS02100 Genome accession   NZ_CP139001
Coordinates   446449..446829 (+) Length   126 a.a.
NCBI ID   WP_396588169.1    Uniprot ID   -
Organism   Bermanella sp. R86510     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 441449..451829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJY35_RS02070 - 441753..442733 (-) 981 WP_396588163.1 aspartate carbamoyltransferase catalytic subunit -
  SJY35_RS02075 pyrR 442730..443239 (-) 510 WP_396588164.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SJY35_RS02080 ruvX 443272..443721 (-) 450 WP_396588165.1 Holliday junction resolvase RuvX -
  SJY35_RS02085 - 443714..444271 (-) 558 WP_396588166.1 YqgE/AlgH family protein -
  SJY35_RS02090 - 444307..445182 (-) 876 WP_396588167.1 energy transducer TonB -
  SJY35_RS02095 gshB 445300..446256 (-) 957 WP_396588168.1 glutathione synthase -
  SJY35_RS02100 pilG 446449..446829 (+) 381 WP_396588169.1 twitching motility response regulator PilG Regulator
  SJY35_RS02105 pilH 446874..447242 (+) 369 WP_396588170.1 twitching motility response regulator PilH -
  SJY35_RS02110 - 447254..447781 (+) 528 WP_396588171.1 chemotaxis protein CheW -
  SJY35_RS02115 - 447913..449946 (+) 2034 WP_396588172.1 methyl-accepting chemotaxis protein -
  SJY35_RS02120 - 449959..450816 (+) 858 WP_396588173.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13970.18 Da        Isoelectric Point: 7.8214

>NTDB_id=906681 SJY35_RS02100 WP_396588169.1 446449..446829(+) (pilG) [Bermanella sp. R86510]
MADNFENVKVMVIDDSKTIRRTAETLLKKVGCSVITATDGFDALAKIADNQPNIIFVDIMMPRLDGYQTCALIKNNSNFK
DTPVVMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIRDHVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=906681 SJY35_RS02100 WP_396588169.1 446449..446829(+) (pilG) [Bermanella sp. R86510]
ATGGCGGACAATTTTGAAAACGTTAAGGTGATGGTGATTGACGACAGTAAAACCATTCGCCGCACCGCTGAGACCTTATT
AAAAAAAGTCGGATGTAGTGTAATTACCGCCACAGACGGCTTTGATGCATTGGCAAAGATTGCCGATAACCAACCTAATA
TCATTTTTGTCGATATTATGATGCCGCGTTTAGACGGTTATCAAACCTGTGCTTTGATCAAAAATAATTCTAATTTTAAA
GACACCCCAGTGGTTATGTTATCCAGCAAGGATGGCCTATTTGATAAGGCTAAAGGCCGGATTGTAGGCTCAGACCAGTA
TCTGACAAAGCCGTTTAGTAAAGAAGAGTTATTAGGCGCCATTCGTGATCACGTAAAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

99.206

0.762
  vicR Streptococcus mutans UA159

40.678

93.651

0.381