Detailed information NTG0906561

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: SIB51_RS17940
• Genome accession: NZ_CP138987
• Coordinates: 3883259..3884479 (-)
• Length: 406 a.a.
• NCBI ID: WP_058089901.1
• Uniprot ID: A0A142FNH3
• Organism: Marinobacter sp. MIT0238
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3878259..3889479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIB51_RS17920	tsaA	3879775..3880524 (-)	750	WP_058089897.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
SIB51_RS17925	-	3880526..3881524 (-)	999	WP_227510106.1	hypothetical protein	-
SIB51_RS17930	coaE	3881607..3882212 (-)	606	WP_058089899.1	dephospho-CoA kinase	-
SIB51_RS17935	pilD	3882310..3883185 (-)	876	WP_058089900.1	prepilin peptidase	Machinery gene
SIB51_RS17940	pilC	3883259..3884479 (-)	1221	WP_058089901.1	type II secretion system F family protein	Machinery gene
SIB51_RS17945	pilB	3884482..3886194 (-)	1713	WP_058089902.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SIB51_RS17950	-	3886585..3887034 (+)	450	WP_058089903.1	pilin	-
SIB51_RS17955	-	3887099..3888844 (+)	1746	WP_058089904.1	PglL family O-oligosaccharyltransferase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44603.64 Da
• Isoelectric Point: 9.7047

>NTDB_id=906561 SIB51_RS17940 WP_058089901.1 3883259..3884479(-) (pilC) [Marinobacter sp. MIT0238]
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPEKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFASALRKHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQMVVNMSEWLQKWWFVVLIGIVGTIFLFK
ESKRRSQKFSDIVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIMRIKNDVSSGT
QLQATMRQQDIFPVMAVQLTAIGEESGNLDEMLRKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide

• Length: 1221 bp

>NTDB_id=906561 SIB51_RS17940 WP_058089901.1 3883259..3884479(-) (pilC) [Marinobacter sp. MIT0238]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGCAAAGACCGGAAGGGCAACAAGACCAAGGGCGAGCT
AACTGGCTCTAACCTGGCCTTGGTGAAAGCTCAACTGCGAAAGCAGGGGATTATCCCGGAGAAGGTCAAGAAGAAGCCCA
AGCCGTTATTTGGTGGCAGCAAGAAGATCACACCGTTTGATATTGCGATGCTTACCCGCCAGCTGGCCACGATGATGAAG
GCCGGCGTTCCCTTGGTGCAGAGTTTCGACATTGTGGCTGACGGCCTTGAGAACAAAGGCTTGCAGGAACTGGTAATGAG
TATCCGGAACGATATTTCCTCCGGCACCGGGTTTGCTTCTGCCCTGCGCAAGCACCCAAAACATTTTGACGACCTGTACT
GCAACCTGGTGGATTCGGGTGAAAAGGCCGGTGCGCTTGAGCAGATGCTGGACAGGATAGCCACCTATCTCGAGAAGACG
GAGTTGCTCAAGAAAAAAGTCAAAAAGGCCATGACTTATCCGATTGCGGTTATTGTGGTTGCTATTGTGGTAACTGCCAT
ATTGCTGGTTAAGGTGGTTCCCCAGTTCGAGAGTTTGTTCCAGGGCTTCGGGGCCGACCTGCCGGTGTTTACGCAGATGG
TGGTTAATATGTCGGAGTGGCTGCAGAAATGGTGGTTTGTTGTGCTTATTGGAATCGTGGGCACGATTTTCTTATTCAAG
GAATCCAAACGCAGGTCTCAGAAGTTCTCGGATATTGTCGACAAATATGTCCTCAAGCTGCCAGTTGTTGGCGAAATCCT
GGACAAATCCGCTGTCGCCAAGTTCGGCCGAGTGCTCTCTACCACCTTCGCCGCCGGTGTTCCATTGGTGGACGCACTGG
ACTCCGTTGCCGGAGCGACCGGTAACGCGGTATACCGGGATGCCATCATGAGAATCAAAAACGATGTCTCAAGCGGCACG
CAACTGCAAGCCACGATGCGCCAGCAAGATATCTTCCCGGTAATGGCTGTGCAATTAACTGCCATCGGCGAAGAATCCGG
TAACCTTGACGAAATGCTGAGAAAGGTCGCTGAGCACTATGAAGCCGTAGTAGACGATATGGTAGACAACCTCACCGCCC
TGATGGAGCCCATGATTATGGCGGTTCTGGGTGTACTGGTAGGCGGCTTGATCATCGCCATGTACCTGCCAATCTTCCAA
ATGGGCCAGGTTGTTGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (277-397)

• Type II secretion system (T2SS), protein F (T2SSF) (72-194)

3D structure

• AlphaFold DB: A0A142FNH3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	66.42	99.754	0.663
pilC	Acinetobacter baumannii D1279779	60.247	99.754	0.601
pilC	Acinetobacter baylyi ADP1	58.374	100	0.584
pilC	Legionella pneumophila strain ERS1305867	52.709	100	0.527
pilG	Neisseria gonorrhoeae MS11	43.103	100	0.431
pilG	Neisseria meningitidis 44/76-A	42.857	100	0.429
pilC	Vibrio campbellii strain DS40M4	40.295	100	0.404
pilC	Vibrio cholerae strain A1552	40.148	100	0.401