Detailed information NTG0906532

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SIB44_RS17895
• Genome accession: NZ_CP138986
• Coordinates: 3874704..3876089 (+)
• Length: 461 a.a.
• NCBI ID: WP_058091306.1
• Uniprot ID: -
• Organism: Marinobacter sp. MIT1392
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3869704..3881089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIB44_RS17880	-	3870345..3871178 (+)	834	WP_058091309.1	outer membrane protein assembly factor BamD	-
SIB44_RS17885	-	3871245..3872909 (-)	1665	WP_058091308.1	NAD+ synthase	-
SIB44_RS17890	-	3873003..3874649 (+)	1647	WP_058091307.1	sensor histidine kinase	-
SIB44_RS17895	pilR	3874704..3876089 (+)	1386	WP_058091306.1	sigma-54-dependent transcriptional regulator	Regulator
SIB44_RS17900	-	3876147..3876707 (+)	561	WP_058091305.1	GspH/FimT family protein	-
SIB44_RS17905	-	3876718..3877191 (-)	474	WP_058091304.1	type IV pilin protein	-
SIB44_RS17910	-	3877205..3880906 (-)	3702	WP_058091303.1	pilus assembly protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50837.07 Da
• Isoelectric Point: 4.8974

>NTDB_id=906532 SIB44_RS17895 WP_058091306.1 3874704..3876089(+) (pilR) [Marinobacter sp. MIT1392]
MTHQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLTTARTLLEQYKPQLCLTDMNLPDGNGIDLVHWIQQHTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKIQDTAESDEPGLLLGKSPQIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHMQGPRADGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKEGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERAEDISLLA
DHILQRIAREYECDPAKLTPAAIDRLQGYDFPGNVRELENILERAFTLCDEDFIDAADLHLGGGAIPGTPVSERSSDTGT
SEAPAPVPEGEIDLEGFLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=906532 SIB44_RS17895 WP_058091306.1 3874704..3876089(+) (pilR) [Marinobacter sp. MIT1392]
ATGACACACCAAACAGCGCTGATTGTTGACGACGAACCGGATATCCGGGACTTACTGGAAATCACCCTCACCCGCATGGG
GATTACCACCTACACCGCACCGGACCTGACTACAGCACGGACCTTGCTTGAACAGTACAAGCCCCAACTGTGCCTGACCG
ACATGAACCTGCCGGACGGCAACGGTATAGACCTAGTGCATTGGATTCAGCAGCACACCCCCTGCACGCCGGTTGCCGTC
ATCACTGCCTACGGCAACATGGACACCGCCATCGAATCACTCAAGGCCGGCGCCTTCGATTTTGTATCCAAGCCCGTGGA
ACTGCCCCGCCTGAGGGAACTGGTAAACAGCGCCCTGAAGCTGAGCGAACCGAAAATCCAGGACACCGCAGAATCCGATG
AACCCGGCCTTCTGCTCGGTAAGTCCCCACAAATCCGCAAGCTGCGAAACCAGACCCGCAAGCTGGCCCGCAGCCAGGCG
CCAGTGTTTATCAGCGGCGAATCCGGCAGTGGAAAAGAGCTGGTCGCCCGCATGATCCACATGCAGGGCCCGCGGGCCGA
TGGCCCCTTTATCGCCGTTAACTGCGGCGCCATCCCTTCGGAACTGATGGAAAGCGAATTCTTTGGCCACAAGAAAGGCA
GTTTTACCGGTGCGGTCGAAAACAAGGAGGGCCTGTTCCGAAGCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCC
GACCTGCCCCTGGCCATGCAGGTAAAGCTGCTGCGCGCCATTCAGGAAAAAGCCGTGCGGCCGGTGGGCGACACCAAGGA
AGTGCCAGTAGATATCCGCGTACTCAGCGCCACCCACAAAAACCTGCCTGAACTGGTGCAGGAAGGCAGCTTCCGTCAGG
ACCTGTTCTACCGCATTAACGTGATTGAACTGGCGGTACCGCCTCTGCGCGAGCGGGCGGAAGACATTTCCCTGCTGGCC
GACCATATTCTGCAGCGCATCGCCCGAGAGTACGAATGCGATCCGGCCAAACTAACGCCAGCCGCAATAGATCGCCTGCA
GGGATACGATTTCCCCGGCAACGTGCGGGAACTGGAAAATATTCTGGAGCGGGCGTTTACGCTGTGTGATGAAGATTTTA
TTGATGCGGCTGATTTGCATCTGGGTGGCGGTGCTATTCCCGGAACCCCGGTATCGGAGCGCAGCTCTGACACTGGCACA
TCAGAGGCTCCTGCTCCTGTGCCCGAGGGGGAGATAGACCTGGAAGGCTTTCTGGAGAACATCGAGCGGCAGGCGATTGA
GAAGGCGCTGGAGGCGACGCGATGGAACAAGACGGCGGCGGCCAAGAGATTGGGGATCAGTTTTCGGGCGTTGCGGTATC
GGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (417-458)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.124	100	0.631
pilR	Acinetobacter baumannii strain A118	54.113	100	0.542