Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SIC12_RS01315 Genome accession   NZ_CP138985
Coordinates   272099..272974 (-) Length   291 a.a.
NCBI ID   WP_058089900.1    Uniprot ID   A0A142FNH4
Organism   Marinobacter sp. MIT1358     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267099..277974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC12_RS01295 - 267166..269520 (-) 2355 WP_058089896.1 hybrid sensor histidine kinase/response regulator -
  SIC12_RS01300 tsaA 269564..270313 (-) 750 WP_058089897.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  SIC12_RS01305 - 270315..271313 (-) 999 WP_227510106.1 hypothetical protein -
  SIC12_RS01310 coaE 271396..272001 (-) 606 WP_058089899.1 dephospho-CoA kinase -
  SIC12_RS01315 pilD 272099..272974 (-) 876 WP_058089900.1 prepilin peptidase Machinery gene
  SIC12_RS01320 pilC 273048..274268 (-) 1221 WP_058089901.1 type II secretion system F family protein Machinery gene
  SIC12_RS01325 pilB 274271..275983 (-) 1713 WP_058089902.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SIC12_RS01330 - 276374..276823 (+) 450 WP_058089903.1 pilin -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32183.51 Da        Isoelectric Point: 7.5112

>NTDB_id=906490 SIC12_RS01315 WP_058089900.1 272099..272974(-) (pilD) [Marinobacter sp. MIT1358]
MPSLDQLLSTPWLLYLTVTLFSLCIGSFLNVVILRLPKMMQQEWRCQCEEFLEVPEKQRKQEAPLSLSKPASTCPSCGHK
IRAWENIPVISWLVLRGKCSSCKAPISPRYPIIEAITAIFSVVTIALLGPTEAALWALLLVWALVALTMIDFDTQLLPDS
ITLPLMWLGLVLNYFGVLTDFNSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAVVGIALMVFKKHGREVPIPFGPYLAAAGLLCLWFGVEIQAIWFGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=906490 SIC12_RS01315 WP_058089900.1 272099..272974(-) (pilD) [Marinobacter sp. MIT1358]
ATGCCCTCTCTAGACCAACTCCTCTCCACCCCCTGGCTCCTATACCTCACCGTCACCCTGTTCTCCCTCTGCATCGGCAG
CTTCCTGAACGTAGTCATCCTGCGCCTGCCCAAAATGATGCAGCAGGAATGGCGTTGCCAGTGTGAAGAGTTTCTGGAGG
TACCGGAAAAGCAAAGAAAGCAGGAAGCACCACTTTCCCTTTCAAAGCCTGCGTCTACCTGCCCCTCCTGTGGCCATAAG
ATTCGGGCCTGGGAAAATATCCCGGTGATCAGCTGGCTGGTGCTGCGGGGCAAATGTTCGTCTTGTAAAGCGCCTATTTC
GCCGCGCTACCCAATCATCGAAGCCATTACCGCCATCTTCTCGGTAGTAACCATCGCTTTGCTGGGGCCAACTGAAGCGG
CGCTTTGGGCCCTGCTGCTGGTATGGGCCCTGGTGGCGCTGACGATGATCGATTTCGACACACAACTGCTGCCAGACAGC
ATCACCCTGCCCCTGATGTGGCTCGGCCTGGTGTTGAACTATTTTGGCGTGTTGACGGACTTTAACAGTGCCTTCTGGGG
TGCCGTTGCCGGGTACCTGTCGCTTTGGTCGGTGTATTGGTTGTTCAAGCTGGTGACTGGCAAAGAAGGTATGGGGCATG
GGGATTTCAAGCTGTTGGCGGCTCTGGGTGCCTGGTTGGGGTGGCAGCTGCTGCCGGCGGTGATTTTGCTGTCGTCGCTG
GTGGGGGCGGTGGTTGGTATTGCGCTGATGGTGTTCAAAAAGCATGGGCGCGAGGTGCCAATTCCGTTTGGGCCTTATCT
GGCGGCGGCTGGGTTGCTGTGTTTGTGGTTTGGGGTGGAGATTCAGGCGATTTGGTTTGGGTTTTTGGGGGTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FNH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.839

94.158

0.526
  pilD Acinetobacter nosocomialis M2

55.474

94.158

0.522
  pilD Vibrio campbellii strain DS40M4

53.237

95.533

0.509
  pilD Vibrio cholerae strain A1552

54.212

93.814

0.509
  pilD Neisseria gonorrhoeae MS11

49.206

86.598

0.426