Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SIB83_RS07175 Genome accession   NZ_CP138970
Coordinates   1356591..1358318 (+) Length   575 a.a.
NCBI ID   WP_413747217.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S9507     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351591..1363318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB83_RS07145 murB 1352166..1353098 (+) 933 WP_413747215.1 UDP-N-acetylmuramate dehydrogenase -
  SIB83_RS07150 - 1353123..1353464 (+) 342 WP_413404601.1 YbaB/EbfC family nucleoid-associated protein -
  SIB83_RS07155 rsgA 1353439..1354320 (-) 882 WP_413404603.1 ribosome small subunit-dependent GTPase A -
  SIB83_RS07160 - 1354340..1354582 (-) 243 WP_413404605.1 sulfurtransferase TusA family protein -
  SIB83_RS07165 dnaJ 1354585..1355715 (-) 1131 WP_413747216.1 molecular chaperone DnaJ -
  SIB83_RS07170 grpE 1355758..1356495 (-) 738 WP_413747318.1 nucleotide exchange factor GrpE -
  SIB83_RS07175 pilB/pilB1 1356591..1358318 (+) 1728 WP_413747217.1 GspE/PulE family protein Machinery gene
  SIB83_RS07180 pilT 1358329..1359405 (+) 1077 WP_413747218.1 type IV pilus twitching motility protein PilT Machinery gene
  SIB83_RS07185 - 1359409..1360833 (+) 1425 WP_413747219.1 type II secretion system F family protein -
  SIB83_RS07190 - 1360847..1362136 (-) 1290 WP_413747220.1 NAD(P)/FAD-dependent oxidoreductase -
  SIB83_RS07195 msrB 1362066..1362575 (-) 510 WP_413404618.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62982.66 Da        Isoelectric Point: 4.9579

>NTDB_id=906364 SIB83_RS07175 WP_413747217.1 1356591..1358318(+) (pilB/pilB1) [Synechococcus sp. MIT S9507]
MSDDRRHLELELLLQRAIPGDFGISDQPVLLEELATMGFDPARHAALAESLRKLLDNNLPVSDEALPLKPPITETPPRHI
EVLPEPITSVSNAAEAETVAETATSYLRDFNVNGVLEADPDEKDADSSKPADLESGLNDAERSPVIDLVDRILMQALELG
ASDIHVEPQQAGLQLRFRQDGVLQSQIEPLPSRMVPAVTSRFKIMAELDIAERRLPQDGRIRRRFQNRTVDFRVNSLPSR
YGEKIVLRLLDSSATQLGLDKLISNADALNLVRTLGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDPIEY
TLPGITQCQVNREKGFDFSQALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDAPSAIARLDEMGVEP
FMVSASLIGIVSQRLLRRVCSTCRIAYRPDPQELARFGLMASNEANVSFFRANHHEGQSNPCPHCQGSGYKGRVGVYEVL
RMNEALAAAVAKGATTDMVRQLALEGGMKTLLGYSLDLVREGHTTLEEVGRMVLTDAGLESERRARALSTLTCHGCGGGL
QEGWLECPYCLTPRH

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=906364 SIB83_RS07175 WP_413747217.1 1356591..1358318(+) (pilB/pilB1) [Synechococcus sp. MIT S9507]
GTGAGCGACGACCGTCGGCATCTGGAACTGGAACTTCTGCTGCAGCGGGCCATTCCAGGCGATTTCGGCATCTCTGATCA
ACCTGTTCTGCTCGAGGAACTGGCGACGATGGGATTTGATCCTGCTCGTCACGCTGCGCTCGCCGAAAGCCTGAGGAAGC
TGCTCGACAACAACCTCCCGGTGAGCGATGAAGCACTCCCCCTCAAACCACCCATCACGGAAACACCGCCAAGACATATC
GAGGTCTTGCCGGAACCCATAACCTCAGTTTCAAACGCTGCAGAGGCCGAAACCGTTGCCGAGACGGCTACCTCCTATCT
GAGGGATTTCAACGTCAATGGGGTGCTGGAAGCTGATCCCGACGAGAAGGATGCCGACTCCTCGAAACCCGCGGATCTTG
AATCGGGGCTCAACGATGCGGAACGCTCACCGGTGATCGATCTGGTGGATCGCATCCTGATGCAGGCCCTCGAACTGGGT
GCCAGCGATATCCATGTGGAGCCTCAGCAGGCCGGACTCCAGCTGCGCTTTCGTCAGGACGGGGTGCTGCAGAGCCAGAT
CGAACCTCTGCCCAGTCGGATGGTGCCTGCGGTGACCTCCAGATTCAAGATCATGGCGGAACTGGACATCGCCGAACGCC
GGCTTCCCCAGGACGGCCGCATCCGCCGCCGCTTCCAGAACAGGACAGTGGATTTCAGGGTCAACAGTCTGCCGAGCCGC
TATGGGGAAAAAATCGTTCTGCGGCTTCTGGACAGCTCGGCCACCCAGCTGGGTCTCGACAAACTCATTTCCAATGCTGA
CGCCCTGAATCTGGTGCGCACCTTGGGATCCAAGCCCTTCGGGATGATCCTGGTCACAGGACCGACTGGATCCGGTAAGT
CGACAACGCTGTATTCCCTGCTGGCGGAGCGCAACGAACCAGGAATCAACATCTCCACCGTTGAGGACCCCATCGAATAC
ACGCTGCCAGGCATCACCCAGTGTCAGGTGAACAGGGAGAAGGGATTTGACTTCAGCCAGGCACTGAGGGCCTTCATGCG
CCAGGACCCGGACGTGCTGCTGGTGGGCGAAACGCGCGATCTGGAAACCGCGAAAACAGCCATCGAAGCCGCACTCACCG
GTCACCTGGTGCTGACCACCCTTCACTGCAACGATGCTCCCAGCGCCATCGCCCGTCTCGATGAGATGGGTGTGGAGCCT
TTCATGGTGAGCGCCTCACTGATCGGGATCGTGTCCCAGCGTCTGCTTCGACGGGTCTGCTCGACTTGCAGGATCGCCTA
CCGGCCTGATCCCCAAGAACTGGCTCGTTTCGGCCTGATGGCGAGCAATGAAGCGAACGTGAGCTTTTTCAGAGCCAACC
ACCATGAAGGCCAGTCCAACCCATGCCCCCATTGCCAGGGCAGTGGTTACAAGGGACGCGTGGGGGTCTACGAAGTGCTG
CGCATGAATGAAGCTCTCGCGGCCGCCGTGGCCAAGGGCGCCACCACAGACATGGTGAGACAGCTCGCTCTGGAGGGAGG
GATGAAAACCTTGCTGGGTTACAGCCTTGACCTGGTGAGGGAGGGACATACGACCCTGGAGGAAGTGGGCAGGATGGTTC
TCACAGACGCGGGGCTGGAATCGGAACGACGCGCACGCGCTCTCAGCACCCTCACCTGCCATGGCTGTGGTGGCGGACTC
CAGGAAGGTTGGCTGGAATGTCCCTACTGCCTGACACCACGTCACTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(152-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.866

85.739

0.53