Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SIB74_RS11470 Genome accession   NZ_CP138959
Coordinates   2302348..2304264 (-) Length   638 a.a.
NCBI ID   WP_063396537.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1306     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2297348..2309264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB74_RS11450 msrB 2298234..2298740 (+) 507 WP_011824706.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SIB74_RS11455 - 2298667..2299989 (+) 1323 WP_063396540.1 NAD(P)/FAD-dependent oxidoreductase -
  SIB74_RS11460 - 2299964..2301244 (-) 1281 WP_063396539.1 type II secretion system F family protein -
  SIB74_RS11465 pilT 2301261..2302337 (-) 1077 WP_063396538.1 type IV pilus twitching motility protein PilT Machinery gene
  SIB74_RS11470 pilB/pilB1 2302348..2304264 (-) 1917 WP_063396537.1 GspE/PulE family protein Machinery gene
  SIB74_RS11475 grpE 2304263..2304976 (+) 714 WP_063396536.1 nucleotide exchange factor GrpE -
  SIB74_RS11480 dnaJ 2305021..2306157 (+) 1137 WP_011824711.1 molecular chaperone DnaJ -
  SIB74_RS11485 - 2306154..2306399 (+) 246 WP_011824712.1 sulfurtransferase TusA family protein -
  SIB74_RS11490 rsgA 2306386..2307351 (+) 966 WP_063396535.1 ribosome small subunit-dependent GTPase A -
  SIB74_RS11495 - 2307308..2307649 (-) 342 WP_011824714.1 YbaB/EbfC family nucleoid-associated protein -
  SIB74_RS11500 murB 2307674..2308597 (-) 924 WP_063396534.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 70322.25 Da        Isoelectric Point: 6.4057

>NTDB_id=906262 SIB74_RS11470 WP_063396537.1 2302348..2304264(-) (pilB/pilB1) [Prochlorococcus sp. MIT 1306]
MLTVCKFTSRHVDGSSTPPTSGGSPHLQFHFFFVTQGRPIPKATNSIQQRLELELLLQVSVLSQEELVVGVELMANHTTL
DISTWQQFQALPINMHNQHLVVAISDQCNEQTKNQLISVLQSQGFSTELRLALASDISQLVAPMRSEQHVESASKSKATK
PLAQTPTSLLAGFSAEGVLEEEPEEQARLASSVEDLESSLMDSDSSPVINLVDRILLEALQTEASDVHVEPQQDGLQIRF
RQDGVLQRYIEPLPSRLIPAVTSRFKIMADLDIAERRMAQDGRIRRTYRNRMVDFRVNSLPSRYGEKICLRLLDSSAPQL
GLDKLISNPSALSLVRNLGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDPIEYTLPGITQCQVNREKGFD
FSTALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDASSAIARLNEMGVEPFMVSASLIGIVSQRLLR
RVCRSCRKSYHPTEKELGRFGLMAHTETGVTFFKAHHHGQEKQPCPNCQGSGYKGRVGVYEVLRMNEELATAVAKGATTD
LVRRLALEAGMKTLLGYSLDLVREGHTTLEEVGRMILTDSGLESERRARALSTLTCNVCGAGLQDGWLECPYCLTARQ

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=906262 SIB74_RS11470 WP_063396537.1 2302348..2304264(-) (pilB/pilB1) [Prochlorococcus sp. MIT 1306]
ATGCTGACCGTTTGCAAATTCACGTCTAGACATGTTGATGGGAGTAGCACACCTCCCACAAGCGGCGGAAGCCCGCACCT
CCAATTTCATTTCTTCTTCGTGACCCAGGGCCGACCAATCCCCAAAGCAACCAACAGCATCCAGCAGCGACTGGAACTGG
AACTGCTCCTACAAGTCAGTGTGCTTAGCCAAGAAGAACTTGTTGTCGGAGTGGAGCTAATGGCCAACCACACCACTCTT
GACATCTCAACGTGGCAACAATTCCAGGCCCTGCCAATCAACATGCACAACCAACATTTGGTTGTAGCCATCTCGGACCA
ATGCAATGAGCAAACCAAAAATCAACTGATCTCAGTGCTGCAGTCGCAAGGCTTCAGCACAGAATTACGTCTCGCGCTGG
CATCCGACATCAGCCAGCTGGTTGCACCAATGAGATCTGAGCAGCACGTTGAATCTGCATCCAAGTCAAAAGCAACAAAG
CCACTTGCACAAACACCAACCTCCCTGCTGGCAGGATTTAGTGCCGAAGGCGTGCTCGAAGAAGAGCCTGAAGAACAAGC
CAGACTTGCTAGTTCCGTAGAGGATTTGGAGTCCAGCTTGATGGACTCAGACAGCTCACCAGTCATCAACCTGGTGGACC
GCATACTGCTAGAGGCACTGCAAACAGAAGCCAGCGACGTACACGTTGAGCCGCAACAAGACGGACTACAGATCCGCTTC
CGTCAAGACGGTGTTCTGCAGCGCTATATCGAACCCCTCCCGAGCCGGTTGATCCCTGCTGTTACCTCACGCTTCAAGAT
CATGGCCGACCTAGACATCGCAGAACGGCGCATGGCTCAGGACGGTCGCATTCGTCGCACATATCGCAATCGTATGGTTG
ATTTCAGGGTTAATAGCCTGCCAAGCCGTTACGGGGAAAAAATCTGTCTGCGACTCCTCGACAGCAGTGCTCCACAACTC
GGGCTAGACAAACTGATCAGCAACCCAAGTGCTCTCTCTCTCGTACGCAACTTGGGCTCTAAGCCCTTCGGCATGATCCT
TGTGACAGGTCCAACAGGATCAGGAAAGTCAACAACCCTTTACTCCCTACTGGCAGAACGCAACGAGCCTGGTATCAACA
TTTCCACCGTAGAAGATCCCATCGAATACACCCTCCCTGGGATTACCCAATGTCAAGTGAACAGGGAAAAAGGCTTCGAT
TTCAGTACTGCACTGAGAGCCTTCATGCGTCAAGACCCAGACGTTCTGCTGGTCGGTGAAACCCGTGACCTAGAAACCGC
AAAAACCGCCATCGAAGCCGCACTGACTGGTCATCTGGTGCTAACCACACTGCATTGCAATGACGCATCAAGTGCGATCG
CCCGCCTCAACGAGATGGGCGTGGAACCATTCATGGTGAGCGCCTCGTTGATTGGCATCGTCTCTCAACGACTTCTACGA
AGAGTGTGCCGTTCTTGTCGTAAGTCCTATCACCCAACTGAAAAAGAACTGGGGCGATTCGGATTGATGGCCCATACAGA
AACTGGCGTGACCTTTTTCAAGGCCCACCATCACGGTCAAGAAAAACAGCCATGCCCCAACTGTCAAGGCAGCGGCTACA
AGGGCCGAGTTGGTGTCTATGAAGTACTGCGCATGAATGAAGAGCTCGCTACAGCCGTCGCCAAAGGTGCCACTACTGAT
TTAGTAAGACGTCTGGCGCTCGAGGCTGGTATGAAAACTCTGTTGGGCTACAGCCTTGACCTGGTGCGAGAAGGCCACAC
CACCCTTGAGGAAGTAGGCCGAATGATCCTCACCGATTCCGGATTGGAATCAGAGCGCCGCGCCAGAGCGCTTAGCACTC
TCACCTGCAACGTCTGCGGGGCAGGCCTCCAAGACGGCTGGCTGGAATGTCCCTACTGTCTAACCGCTCGCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(48-148)

Type II/IV secretion system protein (T2SSE)

(215-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

53.477

94.671

0.506