Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SIB56_RS11690 Genome accession   NZ_CP138955
Coordinates   2122620..2124350 (-) Length   576 a.a.
NCBI ID   WP_413324103.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S9503     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2117620..2129350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB56_RS11670 msrB 2118491..2119009 (+) 519 WP_413324099.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SIB56_RS11675 - 2118939..2120267 (+) 1329 WP_413324100.1 NAD(P)/FAD-dependent oxidoreductase -
  SIB56_RS11680 - 2120242..2121519 (-) 1278 WP_413324101.1 type II secretion system F family protein -
  SIB56_RS11685 pilT 2121536..2122609 (-) 1074 WP_413324102.1 type IV pilus twitching motility protein PilT Machinery gene
  SIB56_RS11690 pilB/pilB1 2122620..2124350 (-) 1731 WP_413324103.1 GspE/PulE family protein Machinery gene
  SIB56_RS11695 grpE 2124446..2125189 (+) 744 WP_413324104.1 nucleotide exchange factor GrpE -
  SIB56_RS11700 dnaJ 2125232..2126365 (+) 1134 WP_413324105.1 molecular chaperone DnaJ -
  SIB56_RS11705 - 2126368..2126610 (+) 243 WP_413324106.1 sulfurtransferase TusA family protein -
  SIB56_RS11710 rsgA 2126630..2127529 (+) 900 WP_413324107.1 ribosome small subunit-dependent GTPase A -
  SIB56_RS11715 - 2127486..2127827 (-) 342 WP_413324108.1 YbaB/EbfC family nucleoid-associated protein -
  SIB56_RS11720 murB 2127852..2128784 (-) 933 WP_413324109.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 62674.14 Da        Isoelectric Point: 4.6003

>NTDB_id=906217 SIB56_RS11690 WP_413324103.1 2122620..2124350(-) (pilB/pilB1) [Synechococcus sp. MIT S9503]
MSDTSLPLELELLLQRSIPGDLGIADAPVLLEELETMGFDPVRHAALAKSLTELLSNNLPVSDEGPSLEQPIAETPPQSN
AVIQTTSETSGSNGIEAESVAETATSYLKDFTVQGVLEADPDEEDADSSKPQDLESGLNDAERSPVIDLVDRILMQALEL
GASDIHVEPQQAGLQLRFRQDGVLQSQIEPLPSRLVPAVTSRFKIMADLDIAERRVPQDGRIRRRFQNRTVDFRVNSLPS
RYGEKIVLRLLDSSATQLGLDKLISNAEALKLVRTLGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDPIE
YALPGITQCQVNREKGFDFSQALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDAPSAIARLDEMGVE
PFMVAASLIGIVSQRLLRRVCPQCRIAYRPNPEELGRFGLMASTEADVSFYRANHHEGQTNPCPKCQGSGYKGRVGVYEV
LRMNEALATSVAKGATTDMVRQLALEGGMKTLLGYSLDLVREGHTTLEEVGRMVLTDSGLESERRARALSTLTCIGCGGG
LQEGWLECPYCLTPRH

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=906217 SIB56_RS11690 WP_413324103.1 2122620..2124350(-) (pilB/pilB1) [Synechococcus sp. MIT S9503]
GTGAGCGACACAAGCCTGCCTCTGGAACTGGAACTGCTTCTGCAGCGGTCAATTCCAGGCGATCTCGGCATCGCTGATGC
ACCGGTTCTGCTCGAGGAACTGGAGACGATGGGATTTGATCCTGTGCGTCATGCCGCGCTCGCGAAGAGCCTGACGGAGC
TGCTCAGCAACAACCTTCCAGTGAGCGATGAAGGTCCATCACTAGAACAACCCATTGCGGAGACACCACCACAAAGCAAC
GCCGTCATCCAGACAACCTCCGAGACCTCGGGTTCAAACGGCATCGAAGCCGAATCCGTGGCGGAAACGGCAACCTCCTA
TCTGAAGGATTTCACCGTTCAGGGGGTGCTCGAAGCCGATCCCGATGAGGAGGACGCCGACTCCTCGAAACCGCAGGACC
TTGAATCCGGGCTTAACGATGCAGAGCGCTCACCCGTGATCGATCTGGTGGATCGCATCCTGATGCAGGCCCTTGAACTG
GGTGCCAGCGACATCCATGTGGAGCCCCAGCAGGCAGGACTCCAGCTGCGCTTCCGTCAGGACGGCGTGCTGCAGAGTCA
GATCGAACCACTTCCGAGCCGACTGGTCCCGGCTGTGACTTCCAGATTCAAGATCATGGCGGATCTGGACATCGCTGAAC
GGCGCGTCCCTCAGGACGGCCGAATCCGCCGCCGCTTCCAGAACAGAACCGTGGATTTCCGGGTCAACAGTCTGCCCAGC
CGCTACGGGGAGAAGATCGTGCTGAGGCTGCTGGACAGCTCCGCCACCCAGCTGGGGCTCGACAAGCTGATTTCCAACGC
TGAAGCCCTGAAGCTGGTTCGCACCCTGGGGTCCAAGCCCTTCGGAATGATCCTGGTGACAGGGCCCACTGGATCCGGCA
AGTCGACAACGCTTTATTCACTGCTGGCGGAACGCAACGAACCGGGGATCAACATCTCCACGGTGGAGGATCCGATCGAA
TACGCCCTGCCAGGCATTACCCAGTGCCAGGTGAACCGGGAGAAAGGGTTTGATTTCAGCCAGGCACTGAGAGCATTCAT
GCGCCAGGACCCGGACGTGCTGCTGGTCGGTGAAACGCGCGATCTTGAAACCGCGAAAACAGCTATCGAAGCGGCTCTCA
CGGGTCACCTGGTGCTGACGACCCTTCACTGCAATGACGCTCCCAGCGCCATCGCGCGCCTCGACGAGATGGGCGTCGAG
CCCTTCATGGTGGCCGCCTCACTGATCGGAATCGTGTCCCAGCGTCTGCTCCGGCGGGTCTGCCCGCAATGCCGCATCGC
CTACCGGCCCAATCCCGAGGAACTGGGGCGCTTCGGACTGATGGCAAGCACCGAGGCGGACGTCAGTTTCTATCGGGCCA
ACCACCATGAAGGCCAGACCAACCCTTGCCCCAAATGTCAGGGCAGTGGTTACAAAGGGCGGGTGGGCGTCTACGAAGTG
CTGCGCATGAATGAGGCGCTGGCGACCTCTGTGGCCAAGGGCGCCACTACCGACATGGTGCGTCAGCTGGCTCTCGAGGG
AGGTATGAAAACCCTGCTGGGCTACAGCCTTGATCTGGTGAGGGAGGGACATACGACTCTGGAGGAAGTGGGCCGCATGG
TGCTCACCGATTCCGGCCTGGAATCAGAGCGAAGAGCCAGGGCCCTGAGCACACTCACCTGCATCGGCTGTGGTGGCGGA
CTCCAGGAAGGTTGGCTGGAATGTCCTTACTGCCTGACCCCACGTCACTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(153-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

63.918

84.201

0.538