Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SIB42_RS02785 Genome accession   NZ_CP138941
Coordinates   543260..544990 (+) Length   576 a.a.
NCBI ID   WP_067093424.1    Uniprot ID   A0A164CFD8
Organism   Synechococcus sp. MIT S9508     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 538260..549990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB42_RS02755 murB 538835..539767 (+) 933 WP_067093419.1 UDP-N-acetylmuramate dehydrogenase -
  SIB42_RS02760 - 539792..540133 (+) 342 WP_067093420.1 YbaB/EbfC family nucleoid-associated protein -
  SIB42_RS02765 rsgA 540108..540989 (-) 882 WP_067093780.1 ribosome small subunit-dependent GTPase A -
  SIB42_RS02770 - 541009..541251 (-) 243 WP_067093421.1 sulfurtransferase TusA family protein -
  SIB42_RS02775 dnaJ 541254..542384 (-) 1131 WP_067093422.1 molecular chaperone DnaJ -
  SIB42_RS02780 grpE 542427..543164 (-) 738 WP_067093423.1 nucleotide exchange factor GrpE -
  SIB42_RS02785 pilB/pilB1 543260..544990 (+) 1731 WP_067093424.1 GspE/PulE family protein Machinery gene
  SIB42_RS02790 pilT 545001..546074 (+) 1074 WP_413328354.1 type IV pilus twitching motility protein PilT Machinery gene
  SIB42_RS02795 - 546091..547368 (+) 1278 WP_067093426.1 type II secretion system F family protein -
  SIB42_RS02800 - 547343..548671 (-) 1329 WP_067093427.1 NAD(P)/FAD-dependent oxidoreductase -
  SIB42_RS02805 msrB 548601..549110 (-) 510 WP_067093428.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63028.39 Da        Isoelectric Point: 4.7200

>NTDB_id=906077 SIB42_RS02785 WP_067093424.1 543260..544990(+) (pilB/pilB1) [Synechococcus sp. MIT S9508]
MSYDRRHLELELLLQRNIPGELVSTDEPSLLQELKAKGFDPVRHSALAERLTELLSKSVGIKDEVPAQEPAITETSQRSN
AAVATNTQTSAPEGSDSESVAETATSYLKDFTVDGILEADPDEKAEDSTGPQDLESGLNDAERSPVIDLVDRILMQALEL
DASDIHVEPQQAGLQLRFRQDGVLQSQIETLPSRLVPAVTSRFKIMADLDIAERRVPQDGRIRRRFQNRTVDFRVNSLPS
RYGEKIVLRLLDSSATQLGLDKLITNAEALQLVRTLGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDPIE
FALPGITQCQVNREKGFDFSQALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDAPSAIARLDEMGVE
PFMVSASLIGIVSQRLLRRVCPQCRVAYRPDPEELGRFGLMASNEADVSFFRANHHEGQAEPCPMCQGSGYKGRVGVYEV
LRMNEALATTVAKGATTDMVRQLALEGGMKTLLGYSLDLVREGHTTLEEVGRMVLTDSGLESERRARALSTLTCGGCGGG
LQEGWLECPYCLTPRH

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=906077 SIB42_RS02785 WP_067093424.1 543260..544990(+) (pilB/pilB1) [Synechococcus sp. MIT S9508]
GTGAGCTACGACCGCCGGCATCTGGAACTGGAACTTCTGTTGCAGCGAAACATCCCAGGCGAGCTCGTCAGCACCGATGA
ACCCTCACTGCTCCAGGAACTGAAAGCGAAGGGGTTTGATCCTGTTCGCCACTCTGCACTTGCCGAACGCCTGACGGAGC
TGCTCAGCAAGAGCGTAGGGATTAAGGATGAAGTTCCGGCGCAAGAACCAGCGATCACAGAAACATCGCAGCGATCCAAC
GCCGCCGTCGCAACCAACACCCAGACCTCGGCTCCGGAAGGTTCAGACAGCGAAAGCGTGGCGGAAACAGCCACGTCTTA
CCTAAAGGATTTCACCGTCGACGGGATTCTGGAAGCCGATCCAGATGAAAAAGCTGAGGACTCCACAGGACCGCAGGATC
TTGAATCCGGCCTCAACGATGCAGAACGCTCCCCCGTGATCGATCTGGTAGATCGCATCCTGATGCAGGCCCTTGAACTG
GATGCAAGCGACATCCATGTGGAGCCTCAGCAAGCCGGACTTCAACTGCGCTTCCGTCAGGACGGAGTGCTGCAGAGCCA
GATCGAAACCCTTCCGAGCCGACTGGTGCCGGCCGTGACCTCCAGGTTCAAGATCATGGCGGACCTGGACATCGCCGAAC
GGCGCGTCCCACAGGACGGTCGCATCCGGCGAAGGTTCCAGAACCGCACGGTGGATTTCCGCGTGAACAGCCTGCCGAGC
CGCTACGGGGAAAAGATCGTGCTGCGGCTGCTGGACAGCTCCGCCACGCAGCTGGGGCTCGACAAGCTGATTACCAATGC
TGAAGCACTTCAGCTCGTGCGCACCCTGGGGTCCAAACCCTTCGGGATGATCCTGGTGACAGGGCCGACTGGATCGGGCA
AGTCCACCACGCTGTATTCCCTGCTGGCCGAACGCAATGAACCGGGGATCAACATCTCCACAGTTGAGGATCCGATCGAA
TTCGCCCTACCAGGTATTACCCAATGCCAGGTGAACCGGGAAAAAGGCTTTGATTTCAGTCAGGCACTGAGAGCCTTCAT
GCGCCAGGACCCAGACGTGCTGCTGGTCGGCGAAACACGCGATCTGGAAACAGCGAAAACAGCCATCGAAGCTGCTCTCA
CTGGTCACCTGGTGCTGACCACGCTCCACTGCAATGACGCCCCTAGCGCCATCGCCAGACTCGACGAGATGGGTGTGGAG
CCTTTCATGGTCAGCGCCTCACTGATCGGGATCGTGTCCCAGCGTCTACTTCGGCGGGTCTGTCCCCAATGCCGTGTTGC
CTACCGGCCGGATCCCGAAGAACTAGGTCGCTTCGGGCTGATGGCAAGCAACGAGGCGGACGTCAGTTTCTTCCGTGCCA
ACCACCATGAAGGCCAGGCCGAGCCTTGCCCCATGTGTCAGGGCAGTGGTTACAAAGGGCGAGTCGGGGTCTACGAAGTG
CTGCGCATGAACGAAGCGCTGGCGACCACCGTGGCCAAGGGCGCCACCACCGACATGGTGCGCCAGCTGGCTCTTGAGGG
AGGCATGAAAACACTTCTGGGTTACAGCCTCGATCTGGTGAGAGAGGGGCACACAACCCTGGAAGAAGTGGGCCGCATGG
TGCTCACGGATTCCGGCCTGGAATCAGAGCGACGGGCCAGAGCCCTGAGCACGCTCACCTGCGGTGGCTGTGGTGGCGGA
CTTCAGGAAGGTTGGCTGGAATGTCCTTACTGCCTGACCCCACGTCACTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(153-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164CFD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

56.89

98.264

0.559