Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABLU27_RS05955 Genome accession   NZ_CP157500
Coordinates   1089058..1089870 (-) Length   270 a.a.
NCBI ID   WP_311875190.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084058..1094870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS05930 (ABLU27_05930) ytpR 1084284..1084910 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  ABLU27_RS05935 (ABLU27_05935) nox 1085073..1086413 (+) 1341 WP_406835310.1 H2O-forming NADH oxidase -
  ABLU27_RS05940 (ABLU27_05940) - 1086503..1086892 (+) 390 WP_406835312.1 single-stranded DNA-binding protein -
  ABLU27_RS05945 (ABLU27_05945) groES 1087012..1087296 (+) 285 WP_003131589.1 co-chaperone GroES -
  ABLU27_RS05950 (ABLU27_05950) groL 1087384..1089012 (+) 1629 WP_003131585.1 chaperonin GroEL -
  ABLU27_RS05955 (ABLU27_05955) vicX 1089058..1089870 (-) 813 WP_311875190.1 MBL fold metallo-hydrolase Regulator
  ABLU27_RS05960 (ABLU27_05960) vicK 1090038..1091480 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  ABLU27_RS05965 (ABLU27_05965) yycF 1091473..1092174 (-) 702 WP_003131580.1 response regulator YycF -
  ABLU27_RS05970 (ABLU27_05970) tmk 1092352..1092987 (+) 636 WP_012897230.1 dTMP kinase -
  ABLU27_RS05975 (ABLU27_05975) - 1093120..1093980 (+) 861 WP_058212446.1 DNA polymerase III subunit delta' -
  ABLU27_RS05980 (ABLU27_05980) yaaT 1094032..1094814 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30550.43 Da        Isoelectric Point: 5.8494

>NTDB_id=906065 ABLU27_RS05955 WP_311875190.1 1089058..1089870(-) (vicX) [Lactococcus lactis strain 2B-9]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDVLLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=906065 ABLU27_RS05955 WP_311875190.1 1089058..1089870(-) (vicX) [Lactococcus lactis strain 2B-9]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGTTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.148

100

0.681