Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ABLU27_RS02425 Genome accession   NZ_CP157500
Coordinates   394154..394819 (+) Length   221 a.a.
NCBI ID   WP_406834784.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389154..399819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS02395 (ABLU27_02395) - 390296..390622 (-) 327 WP_010906269.1 lactococcin 972 family bacteriocin -
  ABLU27_RS02400 (ABLU27_02400) - 391039..391650 (-) 612 WP_406834781.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  ABLU27_RS02405 (ABLU27_02405) - 391843..392064 (+) 222 WP_010906270.1 YqgQ family protein -
  ABLU27_RS02410 (ABLU27_02410) - 392098..393069 (+) 972 WP_017865099.1 ROK family glucokinase -
  ABLU27_RS02415 (ABLU27_02415) - 393072..393458 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  ABLU27_RS02420 (ABLU27_02420) - 393541..393987 (-) 447 WP_004254538.1 DNA starvation/stationary phase protection protein -
  ABLU27_RS02425 (ABLU27_02425) cclA/cilC 394154..394819 (+) 666 WP_406834784.1 prepilin peptidase Machinery gene
  ABLU27_RS02430 (ABLU27_02430) dinB 394770..395864 (-) 1095 WP_023164600.1 DNA polymerase IV -
  ABLU27_RS02435 (ABLU27_02435) - 395943..396434 (-) 492 WP_010906273.1 prolyl-tRNA synthetase associated domain-containing protein -
  ABLU27_RS02440 (ABLU27_02440) - 396513..398006 (-) 1494 WP_406834787.1 basic amino acid/polyamine antiporter -
  ABLU27_RS02445 (ABLU27_02445) - 398198..399328 (-) 1131 WP_058213284.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25636.81 Da        Isoelectric Point: 8.8481

>NTDB_id=906031 ABLU27_RS02425 WP_406834784.1 394154..394819(+) (cclA/cilC) [Lactococcus lactis strain 2B-9]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
VWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=906031 ABLU27_RS02425 WP_406834784.1 394154..394819(+) (cclA/cilC) [Lactococcus lactis strain 2B-9]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
GTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGTTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

36.986

99.095

0.367
  cclA/cilC Streptococcus pneumoniae Rx1

37.209

97.285

0.362
  cclA/cilC Streptococcus pneumoniae D39

37.209

97.285

0.362
  cclA/cilC Streptococcus pneumoniae R6

37.209

97.285

0.362