Detailed information NTG0905877

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SIC15_RS04320
• Genome accession: NZ_CP138917
• Coordinates: 951170..952558 (-)
• Length: 462 a.a.
• NCBI ID: WP_092034272.1
• Uniprot ID: A0A1I2F3U8
• Organism: Marinobacter sp. MIT932201
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 946170..957558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIC15_RS04295	-	947717..948226 (-)	510	WP_092033013.1	PilX N-terminal domain-containing pilus assembly protein	-
SIC15_RS04300	-	948226..949350 (-)	1125	WP_092033016.1	PilW family protein	-
SIC15_RS04305	pilV	949347..949838 (-)	492	WP_194838985.1	type IV pilus modification protein PilV	-
SIC15_RS04310	-	949835..950317 (-)	483	WP_092034276.1	GspH/FimT family pseudopilin	-
SIC15_RS04315	-	950481..951053 (-)	573	WP_092034274.1	GspH/FimT family pseudopilin	-
SIC15_RS04320	pilR	951170..952558 (-)	1389	WP_092034272.1	sigma-54-dependent transcriptional regulator	Regulator
SIC15_RS04325	-	952615..954270 (-)	1656	WP_092034270.1	sensor histidine kinase	-
SIC15_RS04330	-	954364..956034 (+)	1671	WP_092034268.1	NAD+ synthase	-
SIC15_RS04335	-	956095..956928 (-)	834	WP_008170703.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 51006.35 Da
• Isoelectric Point: 5.0510

>NTDB_id=905877 SIC15_RS04320 WP_092034272.1 951170..952558(-) (pilR) [Marinobacter sp. MIT932201]
MTTYTALIVDDEPDIRELLEITLTRMGITTLTAPDLTSARKLLEQNTTHLCLTDMNLPDGNGIELVQWIQKHSPATPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLAEPKADTEDTADEPGLLLGKSPEIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERPDDIPLLA
NHILERIAKEYECDPASLTPKAVERLREYNFPGNVRELENVLERAFTLCDADLIDANDLHLGNGVQHAASATQIIAEGEA
GEREGVAVPDGEIDLEGYLEKIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=905877 SIC15_RS04320 WP_092034272.1 951170..952558(-) (pilR) [Marinobacter sp. MIT932201]
ATGACCACATACACAGCGCTGATCGTTGATGATGAACCGGACATCCGGGAGTTACTTGAGATCACCCTCACCCGGATGGG
CATAACAACCCTCACGGCACCCGACCTCACCAGCGCCCGGAAATTGCTGGAACAGAACACCACCCACCTCTGCCTGACCG
ACATGAACCTGCCAGACGGTAATGGCATCGAACTCGTGCAGTGGATTCAGAAGCATTCTCCCGCCACGCCTGTTGCTGTG
ATTACAGCCTACGGCAACATGGATACCGCGATCGAGTCTCTCAAAGCCGGGGCTTTTGATTTCGTATCCAAGCCGGTGGA
ACTGCCCCGTTTAAGGGAGTTGGTCAATAGCGCCCTCAAATTAGCCGAGCCAAAGGCAGACACAGAAGATACAGCCGACG
AGCCAGGCCTGTTGCTGGGTAAATCGCCAGAGATACGCAAACTCCGTAACCAGACCCGAAAACTGGCCAGAAGCCAAGCG
CCCGTTTTTATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTTGCCAGAATGATCCATCTGCAGGGCCCCCGCCGCGA
GGGACCATTCATCGCGGTTAACTGCGGCGCAATTCCCTCAGAGCTGATGGAAAGCGAATTTTTTGGCCACAAAAAAGGCA
GCTTTACCGGGGCCGTGGAGAATAAAGACGGCTTATTCCGTTCGGCCAACGGCGGCACCTTATTCCTTGATGAGGTGGCA
GACCTGCCCCTCGCCATGCAGGTAAAGCTGCTCCGGGCTATCCAGGAAAAGGCAGTTCGTCCGGTTGGCGATACCAAAGA
GGTGCCCGTGGACATCCGGGTACTGAGCGCTACCCATAAGAACCTGCCGGAACTTGTTCAGGAAGGCAGCTTCCGCCAGG
ATCTTTTCTACCGGATTAACGTAATCGAACTGGCGGTACCTCCTTTAAGAGAGCGACCGGATGATATTCCCCTGCTTGCC
AATCACATCCTTGAGAGGATTGCGAAAGAATATGAATGCGACCCCGCTTCGTTAACGCCAAAGGCCGTGGAACGACTGCG
AGAATATAATTTCCCCGGCAACGTCAGGGAGCTAGAAAACGTATTGGAGCGGGCCTTTACCCTCTGCGACGCCGACCTGA
TTGATGCTAACGATCTCCATCTGGGGAATGGCGTGCAGCACGCGGCCTCCGCCACGCAGATTATTGCCGAGGGAGAGGCT
GGTGAGCGAGAGGGTGTTGCTGTGCCTGATGGGGAAATCGACCTGGAGGGATACCTGGAGAAGATTGAACGACAAGCGAT
TGAGAAGGCGCTTGAAGCTACCCGGTGGAACAAGACGGCGGCTGCTAAACGGCTGGGAATCAGCTTCAGGGCACTTCGTT
ATCGACTAAAAAAGCTTGGAATGGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: A0A1I2F3U8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.853	100	0.639
pilR	Acinetobacter baumannii strain A118	53.913	99.567	0.537