Detailed information NTG0905850

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SIC19_RS05700
• Genome accession: NZ_CP138916
• Coordinates: 1221607..1222995 (+)
• Length: 462 a.a.
• NCBI ID: WP_075195691.1
• Uniprot ID: A0A1W6KD95
• Organism: Marinobacter sp. MIT930201
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1216607..1227995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIC19_RS05685	-	1217288..1218124 (+)	837	WP_041336829.1	outer membrane protein assembly factor BamD	-
SIC19_RS05690	-	1218169..1219821 (-)	1653	WP_075195693.1	NAD+ synthase	-
SIC19_RS05695	-	1219907..1221553 (+)	1647	WP_075195692.1	sensor histidine kinase	-
SIC19_RS05700	pilR	1221607..1222995 (+)	1389	WP_075195691.1	sigma-54-dependent transcriptional regulator	Regulator
SIC19_RS05705	-	1223117..1223689 (+)	573	WP_169052462.1	GspH/FimT family pseudopilin	-
SIC19_RS05710	-	1223846..1224331 (+)	486	WP_083637211.1	GspH/FimT family pseudopilin	-
SIC19_RS05715	pilV	1224340..1224822 (+)	483	WP_178380785.1	type IV pilus modification protein PilV	-
SIC19_RS05720	-	1224825..1225952 (+)	1128	WP_075195688.1	PilW family protein	-
SIC19_RS05725	-	1225952..1226467 (+)	516	WP_075195687.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50879.96 Da
• Isoelectric Point: 4.7542

>NTDB_id=905850 SIC19_RS05700 WP_075195691.1 1221607..1222995(+) (pilR) [Marinobacter sp. MIT930201]
MTTHTALIVDDEPDIRDLLEITLSRMGITTLTAPDITCAKKLLGEHKPQLCLTDMNLPDGNGIELVQWIQQNTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALRLSEAEANTQDTDDEPGLLLGKSTEIQKLRSQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRRDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPDLVQEGIFRQDLFYRINVIELAVPPLRERPDDISLLA
RHILERIGKEYECEPASLTQGAIGRLKQYDFPGNVRELENVLERAFTLCDADQIDAGDLHLGNGVQTASSPTQVIAEGEA
NDDETAPVPDGEIDLENYLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=905850 SIC19_RS05700 WP_075195691.1 1221607..1222995(+) (pilR) [Marinobacter sp. MIT930201]
ATGACCACTCATACCGCCCTGATCGTAGACGACGAACCCGATATCCGGGACCTTCTGGAAATCACACTCAGCCGTATGGG
AATAACAACCCTGACCGCGCCAGACATCACCTGCGCGAAGAAGCTTCTGGGTGAACACAAACCACAACTCTGCCTGACAG
ACATGAACCTGCCCGATGGCAACGGCATCGAGCTTGTGCAGTGGATACAGCAGAATACGCCCTGTACCCCTGTGGCTGTA
ATCACGGCCTACGGCAACATGGATACGGCCATTGAATCCCTGAAGGCCGGTGCCTTCGATTTTGTGTCCAAGCCGGTTGA
GCTTCCGCGGCTTCGGGAGTTGGTCAACAGTGCTCTCCGGTTGTCGGAGGCCGAAGCCAACACTCAGGACACTGACGATG
AACCGGGTCTGTTACTCGGCAAATCAACAGAAATTCAAAAACTCCGAAGCCAAACTCGGAAACTGGCCAGAAGCCAAGCA
CCCGTTTTCATCAGCGGGGAATCGGGTAGCGGTAAAGAACTGGTCGCAAGAATGATTCATTTGCAGGGTCCTCGCCGCGA
CGGTCCCTTTATAGCTGTCAACTGTGGAGCCATCCCCTCTGAACTGATGGAGAGTGAATTTTTTGGGCACAAAAAGGGCA
GCTTTACCGGGGCCGTTGAAAACAAAGACGGCCTGTTTCGATCTGCCAACGGTGGCACTTTGTTTCTGGACGAAGTTGCT
GACCTGCCTCTGGCAATGCAGGTAAAACTCCTGAGGGCAATTCAGGAAAAGGCTGTCCGCCCGGTTGGCGATACCAAGGA
AGTTCCGGTGGATATCCGGGTACTCAGCGCGACCCATAAGAACCTTCCAGATCTGGTTCAGGAAGGCATTTTTCGGCAAG
ACCTTTTCTACCGGATCAACGTCATTGAACTGGCTGTGCCTCCTTTGCGGGAACGACCAGACGACATTTCCTTGCTTGCT
CGCCACATTCTCGAAAGAATCGGTAAAGAATATGAATGCGAACCCGCCTCGCTAACCCAGGGCGCCATCGGGCGGCTCAA
ACAGTACGATTTCCCGGGCAACGTAAGGGAACTCGAAAATGTTCTGGAGCGCGCCTTTACGCTTTGCGATGCCGATCAAA
TTGATGCCGGCGATCTGCACCTGGGAAATGGTGTACAGACGGCGTCGTCCCCCACCCAGGTTATCGCGGAAGGCGAGGCC
AACGATGACGAGACTGCCCCGGTGCCCGATGGCGAGATTGACCTGGAAAACTACCTGGAGAACATAGAGAGACAAGCCAT
CGAGAAGGCTCTGGAAGCCACCCGATGGAATAAAACGGCGGCCGCTAAGCGTCTGGGAATCAGCTTTCGAGCGCTTCGGT
ACCGCCTCAAGAAGCTGGGAATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: A0A1W6KD95

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	100	0.63
pilR	Acinetobacter baumannii strain A118	53.913	99.567	0.537