Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABK819_RS28790 Genome accession   NZ_CP157460
Coordinates   6159694..6160290 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa isolate PA103_delta_UT+fleQ     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6154694..6165290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK819_RS28770 (ABK819_28745) aroK 6155825..6156343 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ABK819_RS28775 (ABK819_28750) pilQ 6156355..6158499 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  ABK819_RS28780 (ABK819_28755) comL/pilP 6158553..6159077 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ABK819_RS28785 (ABK819_28760) pilO 6159074..6159697 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABK819_RS28790 (ABK819_28765) pilN 6159694..6160290 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ABK819_RS28795 (ABK819_28770) pilM 6160290..6161354 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ABK819_RS28800 (ABK819_28775) - 6161539..6164010 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=905746 ABK819_RS28790 WP_003095839.1 6159694..6160290(-) (pilN) [Pseudomonas aeruginosa isolate PA103_delta_UT+fleQ]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=905746 ABK819_RS28790 WP_003095839.1 6159694..6160290(-) (pilN) [Pseudomonas aeruginosa isolate PA103_delta_UT+fleQ]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369