Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGI39_RS02395 Genome accession   NZ_CP138892
Coordinates   520835..521404 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1315     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 515835..526404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGI39_RS02370 (SGI39_02370) cysE 517048..517695 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SGI39_RS02375 (SGI39_02375) cysS 517679..519079 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  SGI39_RS02380 (SGI39_02380) - 519072..519476 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SGI39_RS02385 (SGI39_02385) rlmB 519484..520230 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGI39_RS02390 (SGI39_02390) - 520230..520754 (+) 525 WP_000664732.1 NYN domain-containing protein -
  SGI39_RS02395 (SGI39_02395) sigH 520835..521404 (+) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  SGI39_RS02400 (SGI39_02400) rpmG 521519..521662 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGI39_RS02405 (SGI39_02405) secE 521718..521900 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGI39_RS02410 (SGI39_02410) nusG 521913..522461 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGI39_RS02415 (SGI39_02415) rplK 522642..523064 (+) 423 WP_217654611.1 50S ribosomal protein L11 -
  SGI39_RS02420 (SGI39_02420) rplA 523272..523964 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGI39_RS02425 (SGI39_02425) rplJ 524236..524736 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  SGI39_RS02430 (SGI39_02430) rplL 524779..525147 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGI39_RS02435 (SGI39_02435) - 525322..525930 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=905743 SGI39_RS02395 WP_000872873.1 520835..521404(+) (sigH) [Staphylococcus aureus strain 1315]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=905743 SGI39_RS02395 WP_000872873.1 520835..521404(+) (sigH) [Staphylococcus aureus strain 1315]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984