Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ABLC00_RS10520 Genome accession   NZ_CP157432
Coordinates   2271912..2273405 (+) Length   497 a.a.
NCBI ID   WP_348941102.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2266912..2278405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS10495 (ABLC00_10495) uppS 2266954..2267706 (-) 753 WP_004708401.1 polyprenyl diphosphate synthase -
  ABLC00_RS10500 (ABLC00_10500) frr 2267711..2268265 (-) 555 WP_002049637.1 ribosome recycling factor -
  ABLC00_RS10505 (ABLC00_10505) pyrH 2268351..2269079 (-) 729 WP_000852257.1 UMP kinase -
  ABLC00_RS10510 (ABLC00_10510) rimO 2269131..2270474 (-) 1344 WP_000856678.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ABLC00_RS10515 (ABLC00_10515) glnL 2270816..2271925 (+) 1110 WP_002049598.1 nitrogen regulation protein NR(II) -
  ABLC00_RS10520 (ABLC00_10520) luxO 2271912..2273405 (+) 1494 WP_348941102.1 nitrogen regulation protein NR(I) Regulator
  ABLC00_RS10525 (ABLC00_10525) adeN 2273682..2274335 (+) 654 WP_004708396.1 multidrug efflux transcriptional repressor AdeN -
  ABLC00_RS10530 (ABLC00_10530) argF 2274449..2275369 (+) 921 WP_004708394.1 ornithine carbamoyltransferase -
  ABLC00_RS10535 (ABLC00_10535) - 2275562..2276086 (+) 525 WP_004886872.1 protein tyrosine phosphatase family protein -
  ABLC00_RS10540 (ABLC00_10540) ispF 2276083..2276565 (-) 483 WP_002049661.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABLC00_RS10545 (ABLC00_10545) - 2276669..2277313 (+) 645 WP_004708391.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56226.09 Da        Isoelectric Point: 6.2646

>NTDB_id=905461 ABLC00_RS10520 WP_348941102.1 2271912..2273405(+) (luxO) [Acinetobacter nosocomialis strain XH1679]
MSRNKIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHLDAPDVILTDIRMPGIDGLTFLSKVKNSHPDLPVII
MTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAILHINKLQQQEATKTASPLQSTEIIGESPAMQEVFRAIGRLS
QSHITVLINGESGTGKELVAHALHKHSPRRAKPFIALNMAAIPKDLIETELFGHEKGAFTGANTQHQGRFEQANGGTLFL
DEIGDMPFETQTRLLRVLADGEFYRVGGHIPVKVDVRIVAATHQDLEKLVNEGRFREDLYHRLNVIRIHIPKLAHRSEDI
PMLAQHFLARAGKELGVSPKILRTETTDYMQQLPWPGNVRQLENTCRWLTVMITGREVYPEDLPSELKQVPLQKNSEASQ
PAPSFERISLHHWDELLSQWAIQKLKNGEMKILDIATPMFERTLINAALQQTRGRKRHAAELLGWGRNTLTRKLKELGMD
SADDDDEDEHKVTLSEA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=905461 ABLC00_RS10520 WP_348941102.1 2271912..2273405(+) (luxO) [Acinetobacter nosocomialis strain XH1679]
GTGTCGCGAAATAAAATATGGGTTATTGATGACGATCGCGCCATGCGATGGGTACTTGAAAAGACCTTTAAAGAAGAAGG
ATTTGACGTCACCAATTTTGAAGAAGCTCAAACAGCACTCGAACGTTTACATCTTGATGCGCCGGATGTCATCTTAACTG
ACATCCGTATGCCAGGCATTGATGGGTTAACTTTCTTATCTAAAGTAAAAAACTCTCATCCTGATTTGCCTGTGATCATT
ATGACAGCGCATTCGGACTTAGAGTCTGCTGTATCTAGCTATCAAACTGGTGCATTTGAGTATTTACCAAAACCGTTTGA
TATTGATGAAGCTTTAGCTTTAGTCAATCGAGCAATTTTACATATCAATAAATTGCAGCAACAAGAGGCTACAAAAACTG
CTTCTCCGCTACAATCGACAGAAATTATTGGTGAATCTCCAGCTATGCAAGAGGTTTTCCGAGCAATTGGTCGCTTATCT
CAGTCGCATATTACCGTTTTAATTAATGGTGAGTCAGGAACAGGTAAAGAATTAGTTGCACATGCTTTACATAAGCATTC
ACCACGCAGAGCCAAACCATTTATTGCTCTAAACATGGCAGCAATTCCGAAAGACTTAATTGAAACGGAATTATTTGGCC
ATGAAAAAGGTGCTTTTACTGGCGCTAATACTCAACATCAAGGTCGCTTTGAACAAGCCAATGGCGGCACTCTCTTCCTT
GATGAAATTGGTGACATGCCATTTGAAACACAGACGCGATTACTACGTGTACTCGCAGATGGTGAGTTTTACCGCGTTGG
CGGGCATATCCCTGTTAAAGTTGATGTTCGGATCGTAGCGGCAACACACCAAGATTTAGAAAAATTGGTAAATGAAGGTC
GCTTCCGTGAAGACTTATACCACCGTCTAAATGTAATTCGTATTCATATTCCTAAGCTTGCACATCGAAGTGAAGATATT
CCGATGTTAGCTCAACATTTCTTGGCTCGTGCTGGTAAAGAGTTAGGCGTAAGTCCAAAGATTTTACGTACCGAGACAAC
TGACTATATGCAGCAATTACCATGGCCCGGTAATGTTCGTCAGCTTGAAAATACCTGCCGCTGGTTAACCGTCATGATTA
CTGGCCGTGAGGTTTACCCAGAAGATTTACCTTCAGAACTTAAACAAGTTCCACTCCAAAAAAATAGTGAAGCTAGCCAA
CCTGCTCCATCTTTTGAGCGTATTTCTTTACATCATTGGGATGAGCTACTAAGTCAATGGGCAATTCAAAAACTCAAAAA
TGGCGAAATGAAGATTTTGGATATTGCTACACCAATGTTTGAGCGTACTTTAATTAATGCTGCACTACAGCAAACTCGTG
GGCGCAAACGTCATGCAGCCGAGCTATTAGGTTGGGGTCGTAACACTCTAACCCGAAAGTTAAAAGAACTAGGTATGGAT
TCTGCTGATGACGATGATGAGGATGAACACAAAGTAACTTTGTCTGAAGCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-477)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

40.402

90.141

0.364
  pilR Pseudomonas aeruginosa PAK

37.5

96.579

0.362