Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SGQ81_RS07690 Genome accession   NZ_CP138866
Coordinates   1605369..1606343 (-) Length   324 a.a.
NCBI ID   WP_248499759.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 160     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1600369..1611343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ81_RS07650 (SGQ81_07650) gcvT 1600870..1601961 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  SGQ81_RS07655 (SGQ81_07655) - 1602120..1602644 (-) 525 WP_001015122.1 shikimate kinase -
  SGQ81_RS07660 (SGQ81_07660) - 1602634..1602780 (-) 147 WP_001789879.1 hypothetical protein -
  SGQ81_RS07665 (SGQ81_07665) comGF 1602877..1603374 (-) 498 WP_248499760.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGQ81_RS07670 (SGQ81_07670) comGE 1603292..1603591 (-) 300 WP_217654599.1 competence protein ComGE Machinery gene
  SGQ81_RS07675 (SGQ81_07675) comGD 1603578..1604024 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGQ81_RS07680 (SGQ81_07680) comGC 1604002..1604313 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGQ81_RS07685 (SGQ81_07685) comGB 1604327..1605397 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGQ81_RS07690 (SGQ81_07690) comGA 1605369..1606343 (-) 975 WP_248499759.1 competence type IV pilus ATPase ComGA Machinery gene
  SGQ81_RS07695 (SGQ81_07695) - 1606395..1607018 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  SGQ81_RS07700 (SGQ81_07700) - 1607015..1607344 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGQ81_RS07705 (SGQ81_07705) - 1607344..1608330 (-) 987 WP_000161315.1 ROK family glucokinase -
  SGQ81_RS07710 (SGQ81_07710) - 1608327..1608530 (-) 204 WP_000087561.1 YqgQ family protein -
  SGQ81_RS07715 (SGQ81_07715) - 1608511..1609974 (-) 1464 WP_001017872.1 rhomboid family intramembrane serine protease -
  SGQ81_RS07720 (SGQ81_07720) - 1609986..1610525 (-) 540 WP_000164551.1 5-formyltetrahydrofolate cyclo-ligase -
  SGQ81_RS07725 (SGQ81_07725) rpmG 1610734..1610883 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36854.89 Da        Isoelectric Point: 8.6529

>NTDB_id=905353 SGQ81_RS07690 WP_248499759.1 1605369..1606343(-) (comGA) [Staphylococcus aureus strain 160]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNGIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFDDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGVSVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=905353 SGQ81_RS07690 WP_248499759.1 1605369..1606343(-) (comGA) [Staphylococcus aureus strain 160]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATGGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATTTATTTTTTGAGAATATCAACATTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCGATGATTTTAAACACCTCATGAACAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTTCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCCGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGTGTTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.074

100

0.991
  comGA Staphylococcus aureus N315

99.074

100

0.991