Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SGQ81_RS07665 Genome accession   NZ_CP138866
Coordinates   1602877..1603374 (-) Length   165 a.a.
NCBI ID   WP_248499760.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 160     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597877..1608374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ81_RS07640 (SGQ81_07640) gcvPB 1598039..1599511 (-) 1473 WP_000202191.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SGQ81_RS07645 (SGQ81_07645) gcvPA 1599504..1600850 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SGQ81_RS07650 (SGQ81_07650) gcvT 1600870..1601961 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  SGQ81_RS07655 (SGQ81_07655) - 1602120..1602644 (-) 525 WP_001015122.1 shikimate kinase -
  SGQ81_RS07660 (SGQ81_07660) - 1602634..1602780 (-) 147 WP_001789879.1 hypothetical protein -
  SGQ81_RS07665 (SGQ81_07665) comGF 1602877..1603374 (-) 498 WP_248499760.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGQ81_RS07670 (SGQ81_07670) comGE 1603292..1603591 (-) 300 WP_217654599.1 competence protein ComGE Machinery gene
  SGQ81_RS07675 (SGQ81_07675) comGD 1603578..1604024 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGQ81_RS07680 (SGQ81_07680) comGC 1604002..1604313 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGQ81_RS07685 (SGQ81_07685) comGB 1604327..1605397 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGQ81_RS07690 (SGQ81_07690) comGA 1605369..1606343 (-) 975 WP_248499759.1 competence type IV pilus ATPase ComGA Machinery gene
  SGQ81_RS07695 (SGQ81_07695) - 1606395..1607018 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  SGQ81_RS07700 (SGQ81_07700) - 1607015..1607344 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGQ81_RS07705 (SGQ81_07705) - 1607344..1608330 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19241.96 Da        Isoelectric Point: 10.2436

>NTDB_id=905348 SGQ81_RS07665 WP_248499760.1 1602877..1603374(-) (comGF) [Staphylococcus aureus strain 160]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVTMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFRGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=905348 SGQ81_RS07665 WP_248499760.1 1602877..1603374(-) (comGF) [Staphylococcus aureus strain 160]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAACGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAGAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(69-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

96.97

100

0.97
  comGF Staphylococcus aureus MW2

96.97

100

0.97