Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABKP55_RS09575 Genome accession   NZ_CP157327
Coordinates   1982479..1983135 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain 2024CK-00475     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977479..1988135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP55_RS09540 (ABKP55_09540) dcyD 1978359..1979345 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ABKP55_RS09545 (ABKP55_09545) tcyL 1979360..1980028 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABKP55_RS09550 (ABKP55_09550) tcyN 1980025..1980777 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABKP55_RS09555 (ABKP55_09555) sdiA 1981007..1981729 (+) 723 WP_001154276.1 transcriptional regulator SdiA -
  ABKP55_RS09560 (ABKP55_09560) yecF 1981796..1982020 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABKP55_RS09565 (ABKP55_09565) yecU 1982007..1982183 (-) 177 WP_000590347.1 protein YecU -
  ABKP55_RS09570 (ABKP55_09570) - 1982266..1982337 (-) 72 Protein_1869 transcriptional regulator -
  ABKP55_RS09575 (ABKP55_09575) letA 1982479..1983135 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABKP55_RS09580 (ABKP55_09580) uvrC 1983132..1984964 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABKP55_RS09585 (ABKP55_09585) pgsA 1985021..1985569 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABKP55_RS09605 (ABKP55_09605) yecA 1986219..1986884 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=904896 ABKP55_RS09575 WP_000611335.1 1982479..1983135(+) (letA) [Escherichia coli strain 2024CK-00475]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=904896 ABKP55_RS09575 WP_000611335.1 1982479..1983135(+) (letA) [Escherichia coli strain 2024CK-00475]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486