Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABJ86_RS05445 Genome accession   NZ_AP027800
Coordinates   1110096..1110833 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2017.10.01CC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105096..1115833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ86_RS05415 (VEE56_10480) yfiL 1105255..1105620 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AABJ86_RS05420 (VEE56_10490) aroF 1105829..1106899 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABJ86_RS05425 (VEE56_10500) tyrA 1106910..1108031 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABJ86_RS05430 (VEE56_10510) pheA 1108074..1109234 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABJ86_RS05435 pheL 1109333..1109380 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AABJ86_RS05440 (VEE56_10520) raiA 1109484..1109825 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABJ86_RS05445 (VEE56_10530) comL 1110096..1110833 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABJ86_RS05450 (VEE56_10540) rluD 1110968..1111948 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABJ86_RS05455 (VEE56_10550) yfiH 1111945..1112676 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  AABJ86_RS05460 (VEE56_10560) clpC 1112806..1115379 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=90453 AABJ86_RS05445 WP_000197686.1 1110096..1110833(-) (comL) [Escherichia coli strain 2017.10.01CC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=90453 AABJ86_RS05445 WP_000197686.1 1110096..1110833(-) (comL) [Escherichia coli strain 2017.10.01CC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTTATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376