Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABJ86_RS05350 Genome accession   NZ_AP027800
Coordinates   1093636..1095297 (-) Length   553 a.a.
NCBI ID   WP_000880892.1    Uniprot ID   -
Organism   Escherichia coli strain 2017.10.01CC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088636..1100297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ86_RS05315 (VEE56_10290) - 1089282..1089458 (-) 177 Protein_1037 recombinase family protein -
  AABJ86_RS05320 (VEE56_10300) - 1089741..1090970 (-) 1230 WP_001062342.1 integrase domain-containing protein -
  AABJ86_RS05330 (VEE56_10310) smpB 1091714..1092196 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  AABJ86_RS05335 (VEE56_10320) ratA 1092367..1092804 (+) 438 WP_001491260.1 type II toxin-antitoxin system toxin RatA -
  AABJ86_RS05340 (VEE56_10330) yfjF 1092794..1093084 (+) 291 WP_001117843.1 RnfH family protein -
  AABJ86_RS05345 (VEE56_10340) bamE 1093146..1093487 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  AABJ86_RS05350 (VEE56_10350) recN 1093636..1095297 (-) 1662 WP_000880892.1 DNA repair protein RecN Machinery gene
  AABJ86_RS05355 (VEE56_10360) nadK 1095383..1096261 (-) 879 WP_001059169.1 NAD(+) kinase -
  AABJ86_RS05360 (VEE56_10370) grpE 1096384..1096977 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  AABJ86_RS05365 (VEE56_10380) yfjD 1097031..1098317 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  AABJ86_RS05370 (VEE56_10390) ypjD 1098338..1099129 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61379.33 Da        Isoelectric Point: 5.2547

>NTDB_id=90452 AABJ86_RS05350 WP_000880892.1 1093636..1095297(-) (recN) [Escherichia coli strain 2017.10.01CC]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRNGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDHLDLDPNRLFELEQRLSKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=90452 AABJ86_RS05350 WP_000880892.1 1093636..1095297(-) (recN) [Escherichia coli strain 2017.10.01CC]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCACAGCGGCATGACCGTAAT
AACCGGTGAAACCGGCGCGGGTAAATCTATTGCGATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGAGCTGAAGCCGACA
TGGTGCGTAATGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGCGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
GGAACTACTGCAATACCAATTGAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACTACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTTCGCCACTACTGCGATCATCTGGATCTCG
ATCCCAACCGACTGTTTGAACTTGAACAGCGCCTCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTACCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAATTTCGGGTAACCACCAACCCTGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTAATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGGATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGCGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.336

100

0.383
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362

Multiple sequence alignment