Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SGW63_RS13945 Genome accession   NZ_CP138670
Coordinates   2766275..2766961 (+) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70500     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2761275..2771961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS13910 yqeH 2761802..2762902 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  SGW63_RS13915 aroE 2762916..2763722 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  SGW63_RS13920 yhbY 2763726..2764016 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  SGW63_RS13925 nadD 2764019..2764588 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SGW63_RS13930 yqeK 2764578..2765162 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SGW63_RS13935 rsfS 2765163..2765516 (+) 354 WP_001088020.1 ribosome silencing factor -
  SGW63_RS13940 - 2765519..2766235 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  SGW63_RS13945 comEA 2766275..2766961 (+) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  SGW63_RS13950 - 2767053..2767514 (+) 462 WP_000439693.1 ComE operon protein 2 -
  SGW63_RS13955 comEC 2767519..2769720 (+) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGW63_RS13960 holA 2769777..2770751 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  SGW63_RS13965 rpsT 2770796..2771047 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=904484 SGW63_RS13945 WP_072353822.1 2766275..2766961(+) (comEA) [Staphylococcus aureus strain DA70500]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=904484 SGW63_RS13945 WP_072353822.1 2766275..2766961(+) (comEA) [Staphylococcus aureus strain DA70500]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978