Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW63_RS05400 Genome accession   NZ_CP138670
Coordinates   1080600..1081169 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70500     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075600..1086169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS05360 - 1076074..1076682 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  SGW63_RS05365 rplL 1076857..1077225 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW63_RS05370 rplJ 1077268..1077768 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW63_RS05375 rplA 1078040..1078732 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW63_RS05380 rplK 1078940..1079362 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW63_RS05385 nusG 1079543..1080091 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW63_RS05390 secE 1080104..1080286 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW63_RS05395 rpmG 1080342..1080485 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGW63_RS05400 sigH 1080600..1081169 (-) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  SGW63_RS05405 - 1081250..1081774 (-) 525 WP_000664738.1 NYN domain-containing protein -
  SGW63_RS05410 rlmB 1081774..1082520 (-) 747 WP_338438999.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW63_RS05415 - 1082528..1082932 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SGW63_RS05420 cysS 1082925..1084325 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  SGW63_RS05425 cysE 1084309..1084956 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=904462 SGW63_RS05400 WP_000872874.1 1080600..1081169(-) (sigH) [Staphylococcus aureus strain DA70500]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904462 SGW63_RS05400 WP_000872874.1 1080600..1081169(-) (sigH) [Staphylococcus aureus strain DA70500]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984