Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SGW63_RS00215 Genome accession   NZ_CP138670
Coordinates   37541..38038 (+) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70500     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32541..43038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS00175 - 32585..33571 (+) 987 WP_000161314.1 ROK family glucokinase -
  SGW63_RS00180 - 33571..33900 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGW63_RS00185 - 33897..34520 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SGW63_RS00190 comGA 34572..35546 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SGW63_RS00195 comGB 35518..36588 (+) 1071 WP_165811588.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGW63_RS00200 comGC 36602..36913 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGW63_RS00205 comGD 36891..37337 (+) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGW63_RS00210 comGE 37324..37623 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  SGW63_RS00215 comGF 37541..38038 (+) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGW63_RS00220 - 38135..38281 (+) 147 WP_001789879.1 hypothetical protein -
  SGW63_RS00225 - 38271..38795 (+) 525 WP_001015121.1 shikimate kinase -
  SGW63_RS00230 gcvT 38954..40045 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SGW63_RS00235 gcvPA 40065..41411 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SGW63_RS00240 gcvPB 41404..42876 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=904450 SGW63_RS00215 WP_029694050.1 37541..38038(+) (comGF) [Staphylococcus aureus strain DA70500]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=904450 SGW63_RS00215 WP_029694050.1 37541..38038(+) (comGF) [Staphylococcus aureus strain DA70500]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97