Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW66_RS13015 Genome accession   NZ_CP138669
Coordinates   2642583..2642978 (+) Length   131 a.a.
NCBI ID   WP_338443007.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2637583..2647978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW66_RS12990 - 2638809..2639213 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  SGW66_RS12995 - 2639810..2640043 (+) 234 WP_000384523.1 DUF1146 family protein -
  SGW66_RS13000 murA 2640154..2641419 (+) 1266 WP_338443005.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW66_RS13005 fabZ 2641453..2641893 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW66_RS13010 - 2641949..2642389 (-) 441 WP_000846751.1 YwpF-like family protein -
  SGW66_RS13015 ssb 2642583..2642978 (+) 396 WP_338443007.1 single-stranded DNA-binding protein Machinery gene
  SGW66_RS13020 sceD 2643367..2644062 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  SGW66_RS13025 tenA 2644450..2645139 (+) 690 WP_000396063.1 thiaminase II -
  SGW66_RS13030 thiD 2645132..2645962 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW66_RS13035 thiM 2645946..2646737 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  SGW66_RS13040 thiE 2646739..2647380 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15041.15 Da        Isoelectric Point: 6.7057

>NTDB_id=904442 SGW66_RS13015 WP_338443007.1 2642583..2642978(+) (ssb) [Staphylococcus aureus strain DA70710]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTKLYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904442 SGW66_RS13015 WP_338443007.1 2642583..2642978(+) (ssb) [Staphylococcus aureus strain DA70710]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTAAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985