Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW66_RS07340 Genome accession   NZ_CP138669
Coordinates   1463733..1464302 (-) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70710     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458733..1469302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW66_RS07300 - 1459208..1459816 (-) 609 WP_000020295.1 class I SAM-dependent methyltransferase -
  SGW66_RS07305 rplL 1459991..1460359 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW66_RS07310 rplJ 1460402..1460902 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW66_RS07315 rplA 1461174..1461866 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW66_RS07320 rplK 1462074..1462496 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW66_RS07325 nusG 1462677..1463225 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW66_RS07330 secE 1463238..1463420 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW66_RS07335 rpmG 1463476..1463619 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGW66_RS07340 sigH 1463733..1464302 (-) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  SGW66_RS07345 - 1464383..1464907 (-) 525 WP_000664731.1 NYN domain-containing protein -
  SGW66_RS07350 rlmB 1464907..1465653 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW66_RS07355 - 1465661..1466065 (-) 405 WP_338442922.1 Mini-ribonuclease 3 -
  SGW66_RS07360 cysS 1466058..1467458 (-) 1401 WP_000631980.1 cysteine--tRNA ligase -
  SGW66_RS07365 cysE 1467442..1468089 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=904432 SGW66_RS07340 WP_000872878.1 1463733..1464302(-) (sigH) [Staphylococcus aureus strain DA70710]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904432 SGW66_RS07340 WP_000872878.1 1463733..1464302(-) (sigH) [Staphylococcus aureus strain DA70710]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979