Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SGW66_RS05470 Genome accession   NZ_CP138669
Coordinates   1075669..1076655 (-) Length   328 a.a.
NCBI ID   WP_000959271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70710     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1070669..1081655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW66_RS05445 - 1070929..1071276 (-) 348 WP_001242102.1 hypothetical protein -
  SGW66_RS05450 - 1071462..1072055 (+) 594 WP_000224615.1 CYTH domain-containing protein -
  SGW66_RS05455 - 1072159..1072524 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SGW66_RS05460 yjbH 1072547..1073353 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  SGW66_RS05465 pepF 1073813..1075621 (-) 1809 WP_338443146.1 oligoendopeptidase F -
  SGW66_RS05470 coiA 1075669..1076655 (-) 987 WP_000959271.1 competence protein CoiA family protein Machinery gene
  SGW66_RS05475 mecA 1076776..1077495 (-) 720 WP_001217728.1 adaptor protein MecA -
  SGW66_RS05480 spxA 1077867..1078262 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  SGW66_RS05485 trpS 1078557..1079546 (+) 990 WP_000448938.1 tryptophan--tRNA ligase -
  SGW66_RS05490 opp4C 1079588..1080469 (-) 882 WP_001180265.1 oligopeptide ABC transporter permease -
  SGW66_RS05495 opp4B 1080481..1081443 (-) 963 WP_000593421.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38849.49 Da        Isoelectric Point: 9.7732

>NTDB_id=904427 SGW66_RS05470 WP_000959271.1 1075669..1076655(-) (coiA) [Staphylococcus aureus strain DA70710]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=904427 SGW66_RS05470 WP_000959271.1 1075669..1076655(-) (coiA) [Staphylococcus aureus strain DA70710]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

95.732

100

0.957