Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW60_RS07315 Genome accession   NZ_CP138667
Coordinates   1461910..1462479 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70900     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1456910..1467479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW60_RS07275 - 1457384..1457992 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  SGW60_RS07280 rplL 1458167..1458535 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW60_RS07285 rplJ 1458578..1459078 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  SGW60_RS07290 rplA 1459350..1460042 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW60_RS07295 rplK 1460250..1460672 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW60_RS07300 nusG 1460853..1461401 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW60_RS07305 secE 1461414..1461596 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW60_RS07310 rpmG 1461652..1461795 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGW60_RS07315 sigH 1461910..1462479 (-) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  SGW60_RS07320 - 1462560..1463084 (-) 525 WP_338433170.1 NYN domain-containing protein -
  SGW60_RS07325 rlmB 1463084..1463830 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW60_RS07330 - 1463838..1464242 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SGW60_RS07335 cysS 1464235..1465635 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  SGW60_RS07340 cysE 1465619..1466266 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=904390 SGW60_RS07315 WP_000872876.1 1461910..1462479(-) (sigH) [Staphylococcus aureus strain DA70900]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904390 SGW60_RS07315 WP_000872876.1 1461910..1462479(-) (sigH) [Staphylococcus aureus strain DA70900]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984