Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SGW60_RS05235 Genome accession   NZ_CP138667
Coordinates   1047805..1048791 (-) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70900     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042805..1053791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW60_RS05210 - 1043065..1043412 (-) 348 WP_001242102.1 hypothetical protein -
  SGW60_RS05215 - 1043598..1044191 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  SGW60_RS05220 - 1044295..1044660 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  SGW60_RS05225 yjbH 1044683..1045489 (+) 807 WP_338433547.1 protease adaptor protein YjbH -
  SGW60_RS05230 pepF 1045949..1047757 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  SGW60_RS05235 coiA 1047805..1048791 (-) 987 WP_000959288.1 competence protein CoiA family protein Machinery gene
  SGW60_RS05240 mecA 1048912..1049631 (-) 720 WP_001217728.1 adaptor protein MecA -
  SGW60_RS05245 spxA 1050003..1050398 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  SGW60_RS05250 trpS 1050693..1051682 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SGW60_RS05255 opp4C 1051724..1052605 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  SGW60_RS05260 opp4B 1052617..1053579 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=904385 SGW60_RS05235 WP_000959288.1 1047805..1048791(-) (coiA) [Staphylococcus aureus strain DA70900]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=904385 SGW60_RS05235 WP_000959288.1 1047805..1048791(-) (coiA) [Staphylococcus aureus strain DA70900]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982