Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW58_RS07550 Genome accession   NZ_CP138666
Coordinates   1530055..1530624 (-) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70300     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525055..1535624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW58_RS07510 - 1525529..1526137 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  SGW58_RS07515 rplL 1526312..1526680 (-) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  SGW58_RS07520 rplJ 1526723..1527223 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW58_RS07525 rplA 1527498..1528187 (-) 690 WP_001074620.1 50S ribosomal protein L1 -
  SGW58_RS07530 rplK 1528395..1528817 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW58_RS07535 nusG 1528998..1529546 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW58_RS07540 secE 1529559..1529741 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW58_RS07545 rpmG 1529797..1529940 (-) 144 WP_001791441.1 50S ribosomal protein L33 -
  SGW58_RS07550 sigH 1530055..1530624 (-) 570 WP_000872867.1 RNA polymerase sigma factor Regulator
  SGW58_RS07555 - 1530705..1531229 (-) 525 WP_000664740.1 NYN domain-containing protein -
  SGW58_RS07560 rlmB 1531229..1531974 (-) 746 Protein_1467 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW58_RS07565 - 1531982..1532386 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  SGW58_RS07570 cysS 1532379..1533779 (-) 1401 WP_000631982.1 cysteine--tRNA ligase -
  SGW58_RS07575 cysE 1533763..1534410 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=904349 SGW58_RS07550 WP_000872867.1 1530055..1530624(-) (sigH) [Staphylococcus aureus strain DA70300]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904349 SGW58_RS07550 WP_000872867.1 1530055..1530624(-) (sigH) [Staphylococcus aureus strain DA70300]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979