Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   L6423_RS08390 Genome accession   NZ_AP025204
Coordinates   1672648..1673070 (-) Length   140 a.a.
NCBI ID   WP_237014197.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain 94105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1667648..1678070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6423_RS08370 (Hc94105_1682) cysE 1668453..1669217 (-) 765 WP_237014194.1 serine O-acetyltransferase -
  L6423_RS08375 (Hc94105_1683) speA 1669231..1671081 (-) 1851 WP_115722284.1 biosynthetic arginine decarboxylase -
  L6423_RS08380 (Hc94105_1684) ybeY 1671265..1671777 (+) 513 WP_237014195.1 rRNA maturation RNase YbeY -
  L6423_RS08385 (Hc94105_1685) - 1671908..1672549 (-) 642 WP_237014196.1 TetR/AcrR family transcriptional regulator -
  L6423_RS08390 (Hc94105_1686) dprB 1672648..1673070 (-) 423 WP_237014197.1 Holliday junction resolvase RuvX Machinery gene
  L6423_RS08395 (Hc94105_1687) dprA 1673070..1673858 (-) 789 WP_237014198.1 DNA-processing protein DprA Machinery gene
  L6423_RS08400 (Hc94105_1688) - 1673892..1674926 (-) 1035 WP_237014199.1 divergent polysaccharide deacetylase family protein -
  L6423_RS08405 (Hc94105_1689) minE 1674943..1675179 (-) 237 WP_237014200.1 cell division topological specificity factor MinE -
  L6423_RS08410 (Hc94105_1690) minD 1675176..1675991 (-) 816 WP_237014201.1 septum site-determining protein MinD -
  L6423_RS08415 (Hc94105_1691) - 1676228..1677445 (-) 1218 WP_237014202.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15584.13 Da        Isoelectric Point: 8.0250

>NTDB_id=90433 L6423_RS08390 WP_237014197.1 1672648..1673070(-) (dprB) [Helicobacter cinaedi strain 94105]
MQNKKILACDVGLKRIGLAVTQLGIILPIEPILRKNRNQASKELSEILQTREIEILVVGLPSGGVAEHSDTRKRILHFVG
LVAFSGEIVYIDEDYTSLEALQSSAYMGVKNRLRIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=90433 L6423_RS08390 WP_237014197.1 1672648..1673070(-) (dprB) [Helicobacter cinaedi strain 94105]
ATGCAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCTATTTTGCGTAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATTTTGCAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGTGGCAGAGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTAGCGGGGAGATAGTGTATATTGATGAAGATTATACAAGCCTAGAAGCCTTGCAATCAAGTGCGTATAT
GGGGGTAAAAAATCGGCTTAGGATTCAAAAAGATGGGCGGCTAGATTCTTTGAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

56.154

92.857

0.521

Multiple sequence alignment