Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW61_RS10355 Genome accession   NZ_CP138664
Coordinates   2095386..2095781 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70504     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2090386..2100781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW61_RS10330 thiE 2090984..2091625 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  SGW61_RS10335 thiM 2091627..2092418 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  SGW61_RS10340 thiD 2092402..2093232 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW61_RS10345 tenA 2093225..2093914 (-) 690 WP_000396063.1 thiaminase II -
  SGW61_RS10350 sceD 2094302..2094997 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  SGW61_RS10355 ssb 2095386..2095781 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SGW61_RS10360 - 2095975..2096415 (+) 441 WP_000846751.1 YwpF-like family protein -
  SGW61_RS10365 fabZ 2096471..2096911 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW61_RS10370 murA 2096945..2098210 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW61_RS10375 - 2098321..2098554 (-) 234 WP_000384523.1 DUF1146 family protein -
  SGW61_RS10380 - 2099151..2099555 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=904315 SGW61_RS10355 WP_000932694.1 2095386..2095781(-) (ssb) [Staphylococcus aureus strain DA70504]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904315 SGW61_RS10355 WP_000932694.1 2095386..2095781(-) (ssb) [Staphylococcus aureus strain DA70504]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992