Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW61_RS02555 Genome accession   NZ_CP138664
Coordinates   538568..539137 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70504     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 533568..544137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW61_RS02530 cysE 534781..535428 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SGW61_RS02535 cysS 535412..536812 (+) 1401 WP_043859292.1 cysteine--tRNA ligase -
  SGW61_RS02540 - 536805..537209 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  SGW61_RS02545 rlmB 537217..537963 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW61_RS02550 - 537963..538487 (+) 525 WP_000664731.1 NYN domain-containing protein -
  SGW61_RS02555 sigH 538568..539137 (+) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  SGW61_RS02560 rpmG 539252..539395 (+) 144 WP_126133717.1 50S ribosomal protein L33 -
  SGW61_RS02565 secE 539451..539633 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW61_RS02570 nusG 539646..540194 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW61_RS02575 rplK 540375..540797 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW61_RS02580 rplA 541005..541697 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW61_RS02585 rplJ 541969..542469 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW61_RS02590 rplL 542512..542880 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW61_RS02595 - 543055..543663 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=904284 SGW61_RS02555 WP_000872878.1 538568..539137(+) (sigH) [Staphylococcus aureus strain DA70504]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904284 SGW61_RS02555 WP_000872878.1 538568..539137(+) (sigH) [Staphylococcus aureus strain DA70504]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979