Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW56_RS13235 Genome accession   NZ_CP138663
Coordinates   2667179..2667574 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70518     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2662179..2672574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS13210 - 2663405..2663809 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  SGW56_RS13215 - 2664406..2664639 (+) 234 WP_000384523.1 DUF1146 family protein -
  SGW56_RS13220 murA 2664750..2666015 (+) 1266 WP_000358005.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW56_RS13225 fabZ 2666049..2666489 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW56_RS13230 - 2666545..2666985 (-) 441 WP_000846751.1 YwpF-like family protein -
  SGW56_RS13235 ssb 2667179..2667574 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SGW56_RS13240 sceD 2667963..2668658 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  SGW56_RS13245 tenA 2669046..2669735 (+) 690 WP_000396063.1 thiaminase II -
  SGW56_RS13250 thiD 2669728..2670558 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW56_RS13255 thiM 2670542..2671333 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  SGW56_RS13260 thiE 2671335..2671976 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=904276 SGW56_RS13235 WP_000932694.1 2667179..2667574(+) (ssb) [Staphylococcus aureus strain DA70518]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904276 SGW56_RS13235 WP_000932694.1 2667179..2667574(+) (ssb) [Staphylococcus aureus strain DA70518]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992