Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW56_RS07530 Genome accession   NZ_CP138663
Coordinates   1491445..1492014 (-) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70518     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486445..1497014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS07490 - 1486920..1487528 (-) 609 WP_000020295.1 class I SAM-dependent methyltransferase -
  SGW56_RS07495 rplL 1487702..1488070 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW56_RS07500 rplJ 1488113..1488613 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW56_RS07505 rplA 1488885..1489577 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW56_RS07510 rplK 1489785..1490207 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  SGW56_RS07515 nusG 1490388..1490936 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW56_RS07520 secE 1490949..1491131 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW56_RS07525 rpmG 1491187..1491330 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGW56_RS07530 sigH 1491445..1492014 (-) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  SGW56_RS07535 - 1492095..1492619 (-) 525 WP_000664731.1 NYN domain-containing protein -
  SGW56_RS07540 rlmB 1492619..1493365 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW56_RS07545 - 1493373..1493777 (-) 405 WP_000370179.1 Mini-ribonuclease 3 -
  SGW56_RS07550 cysS 1493770..1495170 (-) 1401 WP_176426959.1 cysteine--tRNA ligase -
  SGW56_RS07555 cysE 1495154..1495801 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=904266 SGW56_RS07530 WP_000872878.1 1491445..1492014(-) (sigH) [Staphylococcus aureus strain DA70518]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904266 SGW56_RS07530 WP_000872878.1 1491445..1492014(-) (sigH) [Staphylococcus aureus strain DA70518]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979