Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SGW56_RS02340 Genome accession   NZ_CP138663
Coordinates   436908..437354 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70518     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431908..442354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS02305 - 432402..432605 (+) 204 WP_000087561.1 YqgQ family protein -
  SGW56_RS02310 - 432602..433588 (+) 987 WP_000161307.1 ROK family glucokinase -
  SGW56_RS02315 - 433588..433917 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGW56_RS02320 - 433914..434537 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  SGW56_RS02325 comGA 434589..435563 (+) 975 WP_338447636.1 competence type IV pilus ATPase ComGA Machinery gene
  SGW56_RS02330 comGB 435535..436605 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGW56_RS02335 comGC 436619..436930 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  SGW56_RS02340 comGD 436908..437354 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGW56_RS02345 comGE 437341..437640 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  SGW56_RS02350 comGF 437558..438055 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGW56_RS02355 - 438152..438298 (+) 147 WP_001789879.1 hypothetical protein -
  SGW56_RS02360 - 438288..438812 (+) 525 WP_001015120.1 shikimate kinase -
  SGW56_RS02365 gcvT 438971..440062 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  SGW56_RS02370 gcvPA 440082..441428 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=904251 SGW56_RS02340 WP_001796473.1 436908..437354(+) (comGD) [Staphylococcus aureus strain DA70518]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=904251 SGW56_RS02340 WP_001796473.1 436908..437354(+) (comGD) [Staphylococcus aureus strain DA70518]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993