Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SGW56_RS02100 Genome accession   NZ_CP138663
Coordinates   390058..390744 (+) Length   228 a.a.
NCBI ID   WP_072468915.1    Uniprot ID   A0A5F0HFN7
Organism   Staphylococcus aureus strain DA70518     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385058..395744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS02065 yqeH 385585..386685 (+) 1101 WP_001280146.1 ribosome biogenesis GTPase YqeH -
  SGW56_RS02070 aroE 386699..387505 (+) 807 WP_000666750.1 shikimate dehydrogenase -
  SGW56_RS02075 yhbY 387509..387799 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SGW56_RS02080 nadD 387802..388371 (+) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SGW56_RS02085 yqeK 388361..388945 (+) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SGW56_RS02090 rsfS 388946..389299 (+) 354 WP_001088020.1 ribosome silencing factor -
  SGW56_RS02095 - 389302..390018 (+) 717 WP_000084840.1 class I SAM-dependent methyltransferase -
  SGW56_RS02100 comEA 390058..390744 (+) 687 WP_072468915.1 ComEA family DNA-binding protein Machinery gene
  SGW56_RS02105 - 390836..391297 (+) 462 WP_000439693.1 ComE operon protein 2 -
  SGW56_RS02110 comEC 391302..393503 (+) 2202 WP_001622275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGW56_RS02115 holA 393560..394534 (+) 975 WP_001282573.1 DNA polymerase III subunit delta -
  SGW56_RS02120 rpsT 394579..394830 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25812.41 Da        Isoelectric Point: 9.3305

>NTDB_id=904245 SGW56_RS02100 WP_072468915.1 390058..390744(+) (comEA) [Staphylococcus aureus strain DA70518]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=904245 SGW56_RS02100 WP_072468915.1 390058..390744(+) (comEA) [Staphylococcus aureus strain DA70518]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HFN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961