Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW62_RS13005 Genome accession   NZ_CP138662
Coordinates   2633449..2633844 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70520     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2628449..2638844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW62_RS12975 - 2629710..2630114 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  SGW62_RS12980 - 2630450..2630542 (+) 93 WP_031824610.1 hypothetical protein -
  SGW62_RS12985 - 2630674..2630907 (+) 234 WP_000384523.1 DUF1146 family protein -
  SGW62_RS12990 murA 2631018..2632283 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW62_RS12995 fabZ 2632317..2632757 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW62_RS13000 - 2632815..2633255 (-) 441 WP_000846746.1 YwpF-like family protein -
  SGW62_RS13005 ssb 2633449..2633844 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SGW62_RS13010 sceD 2634233..2634928 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  SGW62_RS13015 tenA 2635315..2636004 (+) 690 WP_000396064.1 thiaminase II -
  SGW62_RS13020 thiD 2635997..2636827 (+) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW62_RS13025 thiM 2636811..2637602 (+) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  SGW62_RS13030 thiE 2637604..2638245 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=904234 SGW62_RS13005 WP_000932694.1 2633449..2633844(+) (ssb) [Staphylococcus aureus strain DA70520]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904234 SGW62_RS13005 WP_000932694.1 2633449..2633844(+) (ssb) [Staphylococcus aureus strain DA70520]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992