Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | L6429_RS10330 | Genome accession | NZ_AP025196 |
| Coordinates | 1994571..1994993 (-) | Length | 140 a.a. |
| NCBI ID | WP_237021093.1 | Uniprot ID | - |
| Organism | Helicobacter cinaedi strain T36 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1989571..1999993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6429_RS10305 (T36_2075) | - | 1989995..1990192 (+) | 198 | WP_237021090.1 | hypothetical protein | - |
| L6429_RS10310 (T36_2076) | cysE | 1990211..1990975 (-) | 765 | WP_237021091.1 | serine O-acetyltransferase | - |
| L6429_RS10315 (T36_2077) | speA | 1990989..1992839 (-) | 1851 | WP_237021092.1 | biosynthetic arginine decarboxylase | - |
| L6429_RS10320 (T36_2078) | ybeY | 1993024..1993566 (+) | 543 | WP_052086346.1 | rRNA maturation RNase YbeY | - |
| L6429_RS11460 (T36_2079) | - | 1993586..1993708 (+) | 123 | WP_268903679.1 | hypothetical protein | - |
| L6429_RS10325 (T36_2080) | - | 1993830..1994471 (-) | 642 | WP_034585053.1 | TetR/AcrR family transcriptional regulator | - |
| L6429_RS10330 (T36_2081) | dprB | 1994571..1994993 (-) | 423 | WP_237021093.1 | Holliday junction resolvase RuvX | Machinery gene |
| L6429_RS10335 (T36_2082) | dprA | 1994993..1995781 (-) | 789 | WP_237021094.1 | DNA-processing protein DprA | Machinery gene |
| L6429_RS10340 (T36_2083) | - | 1995814..1996872 (-) | 1059 | WP_237021095.1 | divergent polysaccharide deacetylase family protein | - |
| L6429_RS10345 (T36_2084) | minE | 1996873..1997124 (-) | 252 | WP_237021096.1 | cell division topological specificity factor MinE | - |
| L6429_RS10350 (T36_2085) | minD | 1997121..1997936 (-) | 816 | WP_237021097.1 | septum site-determining protein MinD | - |
| L6429_RS10355 (T36_2086) | - | 1998234..1998608 (-) | 375 | WP_237021098.1 | GIY-YIG nuclease family protein | - |
| L6429_RS11485 | - | 1999057..1999329 (-) | 273 | WP_336604675.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15492.97 Da Isoelectric Point: 8.0157
>NTDB_id=90423 L6429_RS10330 WP_237021093.1 1994571..1994993(-) (dprB) [Helicobacter cinaedi strain T36]
MENKKILACDVGLKRIGLAVYTQGIVLPLEPIIRKNRNQASSELSEILKTREIEILVVGLPSGGVAEHSDTRKRILHFVG
LVAFSGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSAAVILQRFLESKNPL
MENKKILACDVGLKRIGLAVYTQGIVLPLEPIIRKNRNQASSELSEILKTREIEILVVGLPSGGVAEHSDTRKRILHFVG
LVAFSGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSAAVILQRFLESKNPL
Nucleotide
Download Length: 423 bp
>NTDB_id=90423 L6429_RS10330 WP_237021093.1 1994571..1994993(-) (dprB) [Helicobacter cinaedi strain T36]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGGCTTGCTGTCTATACGCAAGGCATTGTTTT
GCCCCTTGAGCCTATTATCCGCAAAAATCGCAATCAAGCATCAAGTGAGCTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGTGGCAGAGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTAGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCAGCGGTGATTTTACAAAGATTTT
TAGAATCTAAGAATCCTTTATAG
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGGCTTGCTGTCTATACGCAAGGCATTGTTTT
GCCCCTTGAGCCTATTATCCGCAAAAATCGCAATCAAGCATCAAGTGAGCTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGTGGCAGAGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTAGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCAGCGGTGATTTTACAAAGATTTT
TAGAATCTAAGAATCCTTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
53.077 |
92.857 |
0.493 |