Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SGW62_RS07240 Genome accession   NZ_CP138662
Coordinates   1463148..1463717 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70520     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458148..1468717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW62_RS07200 - 1458622..1459230 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  SGW62_RS07205 rplL 1459405..1459773 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SGW62_RS07210 rplJ 1459816..1460316 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  SGW62_RS07215 rplA 1460588..1461280 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  SGW62_RS07220 rplK 1461488..1461910 (-) 423 WP_001085791.1 50S ribosomal protein L11 -
  SGW62_RS07225 nusG 1462091..1462639 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SGW62_RS07230 secE 1462652..1462834 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SGW62_RS07235 rpmG 1462890..1463033 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  SGW62_RS07240 sigH 1463148..1463717 (-) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  SGW62_RS07245 - 1463798..1464322 (-) 525 WP_000664738.1 NYN domain-containing protein -
  SGW62_RS07250 rlmB 1464322..1465068 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGW62_RS07255 - 1465076..1465480 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SGW62_RS07260 cysS 1465473..1466873 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  SGW62_RS07265 cysE 1466857..1467504 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=904224 SGW62_RS07240 WP_000872873.1 1463148..1463717(-) (sigH) [Staphylococcus aureus strain DA70520]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=904224 SGW62_RS07240 WP_000872873.1 1463148..1463717(-) (sigH) [Staphylococcus aureus strain DA70520]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984