Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SGW62_RS05295 Genome accession   NZ_CP138662
Coordinates   1061742..1062728 (-) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056742..1067728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW62_RS05270 - 1057002..1057349 (-) 348 WP_001242102.1 hypothetical protein -
  SGW62_RS05275 - 1057535..1058128 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  SGW62_RS05280 - 1058232..1058597 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  SGW62_RS05285 yjbH 1058620..1059426 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  SGW62_RS05290 pepF 1059886..1061694 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  SGW62_RS05295 coiA 1061742..1062728 (-) 987 WP_000959289.1 competence protein CoiA family protein Machinery gene
  SGW62_RS05300 mecA 1062849..1063568 (-) 720 WP_001217728.1 adaptor protein MecA -
  SGW62_RS05305 spxA 1063939..1064334 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  SGW62_RS05310 trpS 1064629..1065618 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SGW62_RS05315 opp4C 1065660..1066541 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  SGW62_RS05320 opp4B 1066553..1067515 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=904219 SGW62_RS05295 WP_000959289.1 1061742..1062728(-) (coiA) [Staphylococcus aureus strain DA70520]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=904219 SGW62_RS05295 WP_000959289.1 1061742..1062728(-) (coiA) [Staphylococcus aureus strain DA70520]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979