Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SGW62_RS02220 Genome accession   NZ_CP138662
Coordinates   409433..410119 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain DA70520     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404433..415119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW62_RS02185 yqeH 404960..406060 (+) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -
  SGW62_RS02190 aroE 406074..406880 (+) 807 WP_000666757.1 shikimate dehydrogenase -
  SGW62_RS02195 yhbY 406884..407174 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  SGW62_RS02200 nadD 407177..407746 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SGW62_RS02205 yqeK 407736..408320 (+) 585 WP_001019323.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SGW62_RS02210 rsfS 408321..408674 (+) 354 WP_001088022.1 ribosome silencing factor -
  SGW62_RS02215 - 408677..409393 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  SGW62_RS02220 comEA 409433..410119 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  SGW62_RS02225 - 410211..410672 (+) 462 WP_000439693.1 ComE operon protein 2 -
  SGW62_RS02230 comEC 410677..412878 (+) 2202 WP_020978202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGW62_RS02235 holA 412935..413909 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  SGW62_RS02240 rpsT 413954..414205 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=904204 SGW62_RS02220 WP_001792568.1 409433..410119(+) (comEA) [Staphylococcus aureus strain DA70520]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=904204 SGW62_RS02220 WP_001792568.1 409433..410119(+) (comEA) [Staphylococcus aureus strain DA70520]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969