Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW65_RS10250 Genome accession   NZ_CP138661
Coordinates   2088761..2089156 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70870     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2083761..2094156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW65_RS10225 thiE 2084361..2085002 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  SGW65_RS10230 thiM 2085004..2085795 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  SGW65_RS10235 thiD 2085779..2086609 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW65_RS10240 tenA 2086602..2087291 (-) 690 WP_000396077.1 thiaminase II -
  SGW65_RS10245 sceD 2087677..2088372 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  SGW65_RS10250 ssb 2088761..2089156 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SGW65_RS10255 - 2089350..2089790 (+) 441 WP_000846746.1 YwpF-like family protein -
  SGW65_RS10260 fabZ 2089849..2090289 (-) 441 WP_000447676.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW65_RS10265 murA 2090323..2091588 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW65_RS10270 - 2091699..2091932 (-) 234 WP_000384523.1 DUF1146 family protein -
  SGW65_RS10275 - 2092064..2092156 (-) 93 WP_001790611.1 hypothetical protein -
  SGW65_RS10280 - 2092494..2092898 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=904189 SGW65_RS10250 WP_000932694.1 2088761..2089156(-) (ssb) [Staphylococcus aureus strain DA70870]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904189 SGW65_RS10250 WP_000932694.1 2088761..2089156(-) (ssb) [Staphylococcus aureus strain DA70870]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992